1. Pathway Collages User-defined pathway diagrams Customizable
Optionally painted with high-throughput data
Define via SmartTable or select pathways directly
Export to high-resolution PNG image file
Example:

2. Pathway Collage Operations
Reposition pathways or metabolite nodes
Show connections between same metabolite in different pathways
Merge nodes for same metabolite in different pathways
Delete nodes, add side compounds, add pathways
Edit text
Customize colors, shapes, font sizes
Highlight nodes, edges of interest
Overlay omics data

3. Cellular Dashboard (coming soon)
Omics data displayed as set of hierarchically organized bar graphs
Drill down from general functional categories to individual genes (metabolites, etc.)
See at a glance what metabolic and other processes are most impacted in your omics experiment

4. Dashboard – Main Window

5. Dashboard – Amino Acid Biosynthesis

6. Dashboard – Individual Gene Level

7. Show Pathway, Operons, Data Table

8. Show and Filter by Transcription Factor

9. Dashboard – Other Operations
Customize
Hide, rename, reorder categories
Add graph for pathway, pathway class, GO term, enumerated gene set
Change vertical scale
Magnification
Log scale
Defined upper, lower bounds
Sort by various criteria
Group and average replicate sets
Show Sums for all objects in a category
Enrichment Analysis