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EBI is an Outstation of the European Molecular Biology Laboratory. DAS implementations Bernat Gel 01/03/11
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DAS Implementations 2 How do I DAS? DAS enabled applications DAS libraries ClientsServers ClientsServers Java, PerlJava, Perl, Javascript
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01/03/11 DAS Implementations 3 Ensembl http://www.ensembl.org/
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01/03/11 DAS Implementations 4 Pfam http://pfam.sanger.ac.uk/
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Spice 01/03/11 DAS Implementations 5 http://www.dasregistry.org/spice/
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01/03/11 DAS Implementations 6 Dasty http://www.ebi.ac.uk/dasty/
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01/03/11 DAS Implementations 7 Dalliance http://www.biodalliance.org/
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01/03/11 DAS Implementations 8 GBrowse http://gmod.org/wiki/Gbrowse
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And many more 01/03/11 DAS Implementations 9 Jalview IGB The new EBI search
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01/03/11 DAS Implementations 10 Data Sources?
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01/03/11 DAS Implementations 11 DAS Servers More than 750 DAS servers fom more than 50 organizations Ensembl Uniprot UCSC Many small groups Most of them available at the DAS Registry http://www.dasregistry.org
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01/03/11 DAS Implementations 12 BioMart BioMarts are also DAS servers http://www.biomart.org/
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01/03/11 DAS Implementations 13 What about MY data?
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01/03/11 DAS Implementations 14 easyDAS http://www.ebi.ac.uk/panda-srv/easydas
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01/03/11 DAS Implementations 15 Libraries
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01/03/11 DAS Implementations 16 Clients Bio::DAS::Lite DASobert JDAS http://search.cpan.org/~rpettett/Bio-Das-Lite/ http://www.spice-3d.org/dasobert/index.jsp http://code.google.com/p/jdas/ ttp://code.google.com/p/jsdas/ jsDAS
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01/03/11 DAS Implementations 17 Servers ProServer MyDAS Dazzle http://sourceforge.net/projects/proserver/ http://code.google.com/p/mydas/ http://www.biojava.org/wiki/Dazzle
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01/03/11 DAS Implementations 18 Questions?
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