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EBI is an Outstation of the European Molecular Biology Laboratory. DAS implementations Bernat Gel 01/03/11.

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Presentation on theme: "EBI is an Outstation of the European Molecular Biology Laboratory. DAS implementations Bernat Gel 01/03/11."— Presentation transcript:

1 EBI is an Outstation of the European Molecular Biology Laboratory. DAS implementations Bernat Gel 01/03/11

2 DAS Implementations 2 How do I DAS? DAS enabled applications DAS libraries ClientsServers ClientsServers Java, PerlJava, Perl, Javascript

3 01/03/11 DAS Implementations 3 Ensembl http://www.ensembl.org/

4 01/03/11 DAS Implementations 4 Pfam http://pfam.sanger.ac.uk/

5 Spice 01/03/11 DAS Implementations 5 http://www.dasregistry.org/spice/

6 01/03/11 DAS Implementations 6 Dasty http://www.ebi.ac.uk/dasty/

7 01/03/11 DAS Implementations 7 Dalliance http://www.biodalliance.org/

8 01/03/11 DAS Implementations 8 GBrowse http://gmod.org/wiki/Gbrowse

9 And many more 01/03/11 DAS Implementations 9 Jalview IGB The new EBI search

10 01/03/11 DAS Implementations 10 Data Sources?

11 01/03/11 DAS Implementations 11 DAS Servers More than 750 DAS servers fom more than 50 organizations Ensembl Uniprot UCSC Many small groups Most of them available at the DAS Registry http://www.dasregistry.org

12 01/03/11 DAS Implementations 12 BioMart BioMarts are also DAS servers http://www.biomart.org/

13 01/03/11 DAS Implementations 13 What about MY data?

14 01/03/11 DAS Implementations 14 easyDAS http://www.ebi.ac.uk/panda-srv/easydas

15 01/03/11 DAS Implementations 15 Libraries

16 01/03/11 DAS Implementations 16 Clients Bio::DAS::Lite DASobert JDAS http://search.cpan.org/~rpettett/Bio-Das-Lite/ http://www.spice-3d.org/dasobert/index.jsp http://code.google.com/p/jdas/ ttp://code.google.com/p/jsdas/ jsDAS

17 01/03/11 DAS Implementations 17 Servers ProServer MyDAS Dazzle http://sourceforge.net/projects/proserver/ http://code.google.com/p/mydas/ http://www.biojava.org/wiki/Dazzle

18 01/03/11 DAS Implementations 18 Questions?


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