SPM Software & Resources Wellcome Trust Centre for Neuroimaging University College London SPM Course London, October 2009.

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Presentation transcript:

SPM Software & Resources Wellcome Trust Centre for Neuroimaging University College London SPM Course London, October 2009

Normalisation Statistical Parametric Map Image time-series Parameter estimates General Linear Model RealignmentSmoothing Design matrix Anatomical reference Spatial filter Statistical Inference RFT p <0.05

Software: SPM8  Open Source academic freeware (under GPL)  Documented and informally supported  Requirements: –MATLAB: 7.1 (R14SP3) to 7.9 (R2009b) no toolboxes (EEG/MEG requires ‘signal’) –Supported platforms (MEX files): –File Formats: Images: NIfTI-1 (& Analyze, DICOM) Surface meshes: GIfTI M/EEG: most manufacturers (with FieldTrip’s fileio) Linux (32 and 64 bit)Windows (32 and 64 bit) Mac Intel (32 and 64 bit)

SPM Interface

SPMweb  Introduction to SPM  SPM distribution: SPM2, SPM5, SPM8  Documentation & Bibliography  SPM discussion list  SPM short course  Example data sets  SPM extensions

SPM Toolboxes  User-contributed SPM extensions:

SPM Documentation Peer reviewed literature SPM Books: Human Brain Function I & II Statistical Parametric Mapping Online help & function descriptions SPM Manual

SPM Online Bibliography

External Resources  Wikipedia  Scholarpedia  WikiBooks  MRC-CBU Imaging/MEG wiki  NITRC

SPM Mailing List   Web home page – –Archives, archive searches, instructions  Subscribe – – –join spm Firstname Lastname  Participate & learn – –Monitored by SPMauthors –Usage queries, theoretical discussions, bug reports, patches, techniques, &c…

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