Optimizing Purification and Quantitative Detection of Lysozyme and Avidin Tatiana Soboleva, Ryan Colakovic, Dr. Theresa Salerno (Faculty Mentor)

Slides:



Advertisements
Similar presentations
Protein Purification Initial Questions How much and how pure?
Advertisements

PCR, Gel Electrophoresis, and Southern Blotting
Western Analysis Laboratory procedure that allows you to:
Ion Exchange Laboratory. Today’s Schedule Pre-lab discussion Ion Exchange and Spectrophotometer Ion exchange experiment.
RECRYSTALLIZATION.
Purification of Lipase NONG Yuan Supervisor: Prof. Jan-Christer Janson Department of Surface Biotechnology Uppsala Biomedical Center Uppsala University.
Protein Gel Electrophoresis
Quality Control of Product
Protein Electrophoresis BIT 230. Electrophoresis Separate proteins based on Size (Molecular Weight - MW) SDS PAGE Isoelectric Point Isoelectric focusing.
Protein Purification and Analysis Solubility of proteins important for purification: 60-80% soluble, 20-40% membrane Size of proteins varies Some proteins.
Polyacrylamide Gel Electrophoresis
Chromatography Chapter 4 1 Dr Gihan Gawish. Definition Dr Gihan Gawish  Ion-exchange chromatography (or ion chromatography) is a process that allows.
Ion Exchange Laboratory
B IOCHEMICAL INSTRUMENTAL ANALYSIS -11 Dr. Maha Al-Sedik.
DNA Extraction And Purification BY Dr. Naglaa Fathy Lecturer of Biochemistry and Molecular Biology, faculty of medicine, Benha university Benha university2008.
Proteome.
Lab#6 Western Blotting BCH 462[practical].
PG-Seph. APCCB IDENTIFICATION OF MACRO- PROLACTIN WITH PROTEIN-G SEPHAROSE Jones GRD, Giannopoulos P. Departments of Chemical Pathology, St Vincent’s.
Rizana Mahroof, Kun Yan Zhu, and Bhadriraju Subramanyam
Qualitative Analysis of Product
Manufacture of Human Interleukin 13 Protein Using a Prokaryotic Expression System Ryan Rupp, York College of Pennsylvania, Department of Biological Sciences.
CHMI E.R. Gauthier, Ph.D. 1 CHMI 2227E Biochemistry I Protein purification and characterization.
PREPARED BY: NOR HELYA IMAN KAMALUDIN PTT 202: ORGANIC CHEMISTRY FOR BIOTECHNOLOGY.
Biochemistry February Lecture Analytical & Preparative Protein Chemistry II.
Electrophoresis PAGE Dr Gihan Gawish.
Analysis of Proteins and Peptides Amino acid composition Molecular weight Isoelectric point Subunit structure Prosthetic groups Solubility Biological activity.
Protein Purification from Corn Germ Danielle McConnell Department of Chemical Engineering Iowa State University.
Ion Exchange Laboratory
Western Blotting.
SDS covers proteins in a net negative charge
Results 1.Miller JR, Siripurkpong P, Hawes J, Majdalawieh A, Ro HS, McLeod RS. The trans-10, cis-12 isomer of conjugated linoleic acid decreases adiponectin.
AMINO ACID ANALYSIS. Amino Acid Analysis  Amino acid analysis is the determination of what types of amino acids and how many of each compose a protein.
Lab 6 Salt fractionation In aqueous environments salt ions interact strongly with their complementary charge on a water molecule If the concentration of.
Development of Western Blots for Actin without the use of radioactivity Geoff Theobald STEP Summer Internship Program June 2003.
Amino acids/Proteins.
Proteomics The science of proteomics Applications of proteomics Proteomic methods a. protein purification b. protein sequencing c. mass spectrometry.
Is Phosphorylation of Calretinin a Mechanism for Ca 2+ Regulation at Synapses? Erika Marulanda O’Day Lab SPUR 2005.
Chap. 3. Problem 2. Fully protonated glycine has two dissociable protons, one on its -carboxyl group (-COOH) and one on its -amino group (-NH3+). The.
Lecturer: David. * Reverse transcription PCR * Used to detect RNA levels * RNA is converted to cDNA by reverse transcriptase * Then it is amplified.
Biochemical instrumental analysis - 11 Dr. Maha Al-Sedik 2015 CLS 332.
The effect of salts and chaperone proteins on Alkaline Phosphatase stability Aka: the results of 271 continuous enzyme activity assays Mary Klein Dhruve.
Bioprocessing Bioprocessing deals with the manufacture of biochemicals, biopharmaceuticals, foods, nutraceuticals, and agrochemicals New biologically derived.
Western blotting Pete Jones.
Lab 6 Ig Purification What will the Ig be used for? How pure does it need to be? What is the source of the antibody (serum, ascites, cell culture supernatant)
Tymoczko • Berg • Stryer © 2015 W. H. Freeman and Company
Ubiquitin Dependent Proteolysis in the Frozen Wood Frog Michael Ulrich 1, Ken Storey 2, and Frank van Breukelen 3 1,3 School of Life Sciences, University.
Protein Purification Why Purify- Arthur Kornberg Handout Strategy –Starting materials, –Capture, Intermediate Purification, polishing Assays, quantitation.
Quality Control of Product
Lab# 5 Western Blot BCH 462[practical].
Protein Characterization/Purification
Amino Acids, Peptides, and Proteins
Protein Purification BL
Blot, Blot, Western Baby Kristin B. Dupre June 30th, 2011.
EuPA 2013 Scientific meeting, St Malo, France, october 2013
No measureable binding
Qualitative tests of protein
Analysis of CDCP1 as a potential prostate cancer biomarker.
Ion Exchange Laboratory
Differential proteome analysis of normal and osteoarthritic chondrocytes reveals distortion of vimentin network in osteoarthritis  S. Lambrecht, M.Pharm.,
Volume 7, Issue 8, Pages (August 2000)
Analytical Characteristics of Cleavable Isotope-Coded Affinity Tag-LC-Tandem Mass Spectrometry for Quantitative Proteomic Studies  Cecily P. Vaughn, David.
N Burton-Wurster, Ph. D. , W Liu, M. D. , Ph. D. , G. L Matthews, D. V
Analysis of Proteins with Caseinolytic Activity in a Human Stratum Corneum Extract Revealed a Yet Unidentified Cysteine Protease and Identified the So-Called.
Different applications of protein electrophorasis
Volume 7, Issue 8, Pages (August 2000)
p53 Protein Exhibits 3′-to-5′ Exonuclease Activity
Diagnostic tests for antibody or antigen
Volume 19, Issue 8, Pages (August 2011)
Lab# 5 Western Blot BCH 462[practical].
BY HALAVATH RAMESH 16-MCH-001 DEPARTMENT OF CHEMISTRY LOYOLA COLLEGE –CHENNAI UNIVERSITY OF MADRAS Protein Purification.
Presentation transcript:

Optimizing Purification and Quantitative Detection of Lysozyme and Avidin Tatiana Soboleva, Ryan Colakovic, Dr. Theresa Salerno (Faculty Mentor) Department of Chemistry and Geology, Minnesota State University, Mankato, MN Abstract Background/Significance Table 1. Summary of Egg White Protein Characteristics Methodology Results Figure 1. The figure presents Western Blot analysis stages. Proteins are separated into individual chains on a 15% denaturing gel, and then are transferred to a nitrocellulose membrane. After blocking, the blot is exposed to specific primary and secondary antibodies and imaged. Conclusions References Acknowledgements Egg whites separatedpH adjustment with appropriate bufferHeat treatment at 65 o pH adjustment to 7.0 and centrifugeDialysisIon-exchange ChromatographyProtein quantitation Purification of Egg White Proteins Western Blot Analysis Gel Electrophoresis Separate the egg white proteins on a 15% denaturing Laemmli gel Electroblotting The proteins are transferred to a nitrocellulose membrane at 100V, 1.5 hrs. Immuno-detection The blot is exposed to anti-avidin or anti-lysozyme antibodies Secondary ab with IR labels is added 2o ab Hen egg white is one of the major raw materials used in food industry especially in foaming and gelling. Egg white consists of many different proteins that vary greatly in molecular weights and pI (isoelectric point) values. Two of its minor proteins, avidin and lysozyme have important commercial applications. In this research project, we tested the effect of pH and heat denaturation at 65 o on the purification and recovery of avidin and lysozyme proteins from egg white. Four different pH conditions were chosen; these included ascorbate buffers at pH values of 4 and 5 and phosphate buffers at pH values of 6 and 7. Following heat denaturation and dialysis, the minor proteins were purified by cation exchange chromatography. We also optimized a Western Blot method to quantitate differences in the recovery of the egg white proteins. In this method we were successfully detected small amounts of both proteins using IR detection. It was found that an ascorbate buffer with an initial pH of 5.0 gave the best recovery of both avidin and lysozyme proteins in the eluate 1 fraction. The pH values of 5 and 6 were the best for the removal of a major contaminant, ovotransferrin. These findings allow new insights into the future improvements in the purification of lysozyme and avidin, and have also provided methods that can be used in the laboratory project for Biochemistry 360 students. Experimental Design/ Objectives Egg white proteins differ considerably in their charge and mass properties. Lysozyme and avidin are minor protein species with important commercial applications. Both of these egg white proteins have very basic pI values and are commonly purified with cation exchange chromatography [3]. Improvements on this procedure might be obtained through the selective precipitation of contaminants with acidic pH buffers [4] and thermal denaturation [5]. Both lysozyme and avidin have been characterized using Western Blotting, but little has been done for avidin quantitative analysis. To optimize the purification of avidin and lysozyme by altering pH conditions during heat denaturation before cation exchange chromatography To develop a western blot procedure using fluorescence from near IR labeled antibodies for the quantitative detection of avidin and lysozyme and to use this to analyze E1 samples To use the developed Western Blot procedure to analyze the purity of the ion- exchange fractions at optimal pH conditions Both Eluate 1 and Eluate 2 (E1 and E2) fractions 50 mM Ascorbate pH mM Ascorbate pH mM Phosphate pH mM Phosphate pH 7.0 Figure 2. Lysozyme Blot of E1 Figure 3. Avidin Blot of E1 pH= 4pH= 5pH= 6pH= 7 Lysozyme Ovotransferrin.660ND.338 pH= 4pH= 5pH= 6pH= 7 Avidin Ovotransferrin Western Blot Analysis of E1 and E2 fractions Figure 4. Lysozyme Blot Figure 5. Avidin Blot pH 4.2 4, 65 o pH 4.2 4’, 65 o pH 4.2 8, 65 o pH 4.2 8, 65 o pH 4.8 4, 65 o Lysozyme (E1) Lysozyme (E2) ^ Ovalbumin Y (E2)ND Ovotransferrin (E2)ND.362ND [1] Gue Arin-Dubiard, C.; Pasco, M.; Molle, D.F. Proteomic Analysis of Hen Egg White. Rennes Cedex, France [2] Li-Chan, E.; Nakai, S. Biochemical basis for the properties of egg white. Crit. ReV. Poult. Biol. 1989, 2, [3]Thomas, B.R.; Vekilov, P.G.; Rosenberger, F. Heterogeneity Determination and Purification of Commercial Hen Egg- White Lysozyme. Acta Cryst. (1996) [4] STADELMAN, W.J.; COTTERILL, O.J. Egg science and technology. Westport: Avi Publishing, p. [5]Van der Plancken, A.Van Loey, ME.Hendrickx.Effect of heat-treatment one the physico- chemical properties of egg white proteins: A kinetic study. Newspaper of Food Engineering. 2006; 75: Dr. Theresa SalernoDepartment of Chemistry and Geology Honors GrantBiochemistry 360 Students This document is available in alternative format to individuals with disabilities by calling Accessibility Resources at (V), or 711 (MRS/TTY). pH 4.2 4’, 65 o pH 4.2 4’, 65 o pH 4.2 8’, 65 o pH 4.2 8’, 65 o pH 4.8 4, 65 o Avidin (E1) Avidin (E2) Ovalbumin Y (E2) Ovotransferrin(E2)ND2.57ND Table 4. Signal Intensities for Lysozyme BlotTable 5. Signal Intensities for Avidin Blot Western Blots were successfully obtained and detected low lysozyme and avidin levels in the eluate 1 (E1) fraction. Impure antibodies allowed for the detection of contaminating proteins. Signal intensities were determined for equal amounts of total protein. They suggest that lower pH conditions are optimal, but signals are low and duplicates were not run. The pH conditions at 5 and 6 were the best for the removal of ovotransferrin; the signal intensities were 5-6x lower. Optimization of the pH Conditions- Analysis by Western Blot The E2 fractions contained over 20x greater amounts of both avidin and lysozyme compared to the E1 fractions. The major contaminants were ovalbumin Y and ovotransferrin, but except for one sample ovotransferrin was not detected in the E2 fraction. Removal of ovalbumin Y was greatest at a pH of 4.2. Variability exist in student samples. Lysozyme was detected and quantitated with the Western Blot, and MW analysis gave a band of ~ 13kDa. Avidin was detected and quantitated on the Western Blot: its monomer molecular weight was ~15.9 kDa. Although the antibodies were not pure, this did not interfere with the analyses of the bands. Initial experiments suggested that lower pH optimizes yield but further experiments suggest that variability exists. The pH does affect the removal of contaminating samples. Further work should investigate the introduction of a normalizing control. Optimization of pH Conditions- Qualitative Observations Heat denatured samples at pH 7.0 and 6.0 were slightly cloudy whereas pH 5.0 had the most amount of precipitate formation. After pH adjustment the pH 4.0 sample did show precipitates. E1 E1 E1 E1 E1 E2 E2 E2 E2 E2 MW std. 4.2(4’) 4.2(8’) 4.2(4’) 4.8(4’) 4.2(8’) 4.2(4’) 4.2(8)’ 4.2(4’) 4.8(4’) 4.2(8’) E1 E1 E1 E1 E1 E2 E2 E2 E2 E2 MW std. 4.2(4’) 4.2(8’) 4.2(4’) 4.8(4’) 4.2(8’) 4.2(4’) 4.2(8)’ 4.2(4’) 4.8(4’) 4.2(8’) ^ bubble in blot MW pH=7 pH=6 pH=5 pH=4 Avidin pH=4 pH=5 pH=6 pH=7 MW