4.A.1 Biomolecules The subcomponents of biological molecules and their sequence determine the properties of that molecule. Read chapter 5 and complete the reading guide Watch the following video: http://www.bozemanscience.com/042-biologoical-molecules Draw 6 large boxes on your paper

A polymer is a large molecule made from repeating subunits called monomers.

a. Structure and function of polymers are derived from the way their monomers are assembled.

Monomers are assembled into polymers by a condensation reaction, also called a dehydration synthesis reaction. This occurs when two monomers bond together through the loss of a water molecule.

What are polymers made from? Box #1 What are polymers made from? How are polymers assembled? (include the by products of the reaction)

Polymers are disassembled to monomers by hydrolysis, a reaction that is essentially the reverse of the dehydration reaction.

Nucleic Acids

In nucleic acids, biological information is encoded in sequences of monomers called nucleotides.

Each nucleotide has the following structural components: a five-carbon sugar a phosphate group a nitrogen base

Deoxyribose sugar is in DNA and ribose sugar is in RNA.

The bonds that connect nucleotides are called phosphodiester bonds.

Phosphodiester bonds form by condensation reactions.

DNA and RNA differ in function and differ slightly in structure DNA and RNA differ in function and differ slightly in structure. These structural differences account for the differing functions. DNA RNA Deoxyribose sugar Thymine Shape: double helix Ribose sugar Uracil Shape: single strand

Answer the following about nucleic acids: Box #2 Answer the following about nucleic acids: What are the monomers What are the structural components of the monomer Differences between DNA and RNA

Proteins

Proteins are derived from polypeptides, which are polymers built from the same set of 20 amino acids.

A functional protein consists of one or more polypeptides twisted, folded, and coiled into a unique shape.

An amino acid contains an amino group, a carboxyl group, and an R group attached to a central carbon. Amino Group Carboxyl Group

Amino acids differ in their properties due to differences in their R groups, also called side chains. Amino Acids with Electrically Charged Side Chains Aspartic acid Glutamic acid Lysine Arginine Histidine

Amino acids are linked by peptide bonds.

Peptide bonds form from condensation, or dehydration synthesis, reactions.

A polypeptide chain is the primary structure of the protein.

The secondary structure of a protein result from hydrogen bonds between amino acids. Typical secondary structures are a coil called an  helix and a folded structure called a  pleated sheet.  pleated sheet  helix

Tertiary structure is determined by interactions between R groups Tertiary structure is determined by interactions between R groups. These interactions include hydrogen bonds, ionic bonds, hydrophobic interactions, and van der Waals interactions. Strong covalent bonds called disulfide bridges may reinforce the protein’s structure.

Quaternary structure results when two or more polypeptide chains form one macromolecule.

Collagen is a fibrous protein consisting of three polypeptides coiled like a rope. Hemoglobin is a globular protein consisting of four polypeptides: two alpha and two beta chains.

Proteins are affected by changes in: This loss of a protein’s native structure is called denaturation. A denatured protein is biologically inactive. Proteins are affected by changes in: pH Salt concentration Temperature Other environmental

Most proteins probably go through several states on their way to a stable structure. Chaperonins are protein molecules that assist the proper folding of other proteins.

Answer the following about proteins: Box #3 Answer the following about proteins: How are functions determined? How many amino acids are there? How do amino acids differ? What type of bonds link amino acids? How are the bonds formed?

Lipids

Lipids are the one class of large biological molecules that do not form polymers. The most biologically important lipids are fats, phospholipids, and steroids.

In general, lipids are nonpolar, having little or no affinity for water. Lipids are hydrophobic because they consist mostly of hydrocarbons, which form nonpolar covalent bonds.

Fats are constructed from two types of smaller molecules: glycerol and fatty acids.

Fatty acids are bonded to the glycerol molecule by ester bonds.

The formation of ester linkages is a dehydration synthesis reaction.

Differences in saturation determine the structure and function of lipids.

Saturated fatty acids have the maximum number of hydrogen atoms possible and no double bonds.

Unsaturated fatty acids have one or more double bonds Unsaturated fatty acids have one or more double bonds. This results in a bent structure.

Phospholipids have polar regions that interact with other polar molecules such as water. They also have nonpolar regions that do not interact with water.

Answer the following about lipids: Why are lipids considered nonpolar? Box #4 Answer the following about lipids: Why are lipids considered nonpolar? How is structure and function determined for lipids? What is the difference between saturated and unsaturated fatty acids?

Carbohydrates

Carbohydrates include sugars and the polymers of sugars Carbohydrates include sugars and the polymers of sugars. The monomers of carbohydrates are monosaccharides, or simple sugars. Carbohydrate polymers are called polysaccharides. Monosaccharide Polysaccharide

Monosaccharides have molecular formulas that are usually multiples of CH2O. Glucose (C6H12O6) is the most common monosaccharide. Glucose

Polysaccharides have storage and structural roles Polysaccharides have storage and structural roles. The structure and function of a polysaccharide are determined by its sugar monomers and the positions of glycosidic linkages.

Starch, a storage polysaccharide of plants, is constructed of monomers of  glucose. Plants store starch as granules within chloroplasts and other plastids.  glucose Starch, made from 1-4  glycosidic linkages

Glycogen, a storage polysaccharide in animals, is made from highly branched chains of  glucose . Glycogen is stored mainly in liver and muscle cells.

Cellulose is a major component of plant cell walls Cellulose is a major component of plant cell walls. Cellulose is a polymer of  glucose, and is not digestible by animals.  glucose Cellulose, made from 1-4  glycosidic linkages

Starch vs. Cellulose Starch, made from 1-4  glycosidic linkages Cellulose, made from 1-4  glycosidic linkages

Chitin, a structural polysaccharide, is found in the exoskeleton of arthropods and the cell walls of many fungi.

Answer the following about carbohydrates: Box #5 Answer the following about carbohydrates: What are the monomers and polymers of carbohydrates? How are carbohydrates formed? Describe two functions of carbohydrates.

Directionality influences structure and function of polymers Directionality influences structure and function of polymers. An example is the directionality of DNA that determines the direction in which complementary nucleotides are added during DNA synthesis.

Proteins have an amino end and a carboxyl end.

The type of bonds between monosaccharides determines their relative orientation in a carbohydrate. This then determines the secondary structure of the carbohydrate.

Box #6 How would changes to the structure a protein change the functionality of the molecule?

Learning Objectives: LO 4.1 The student is able to explain the connection between the sequence and the subcomponents of a biological polymer and its properties. [See SP 7.1]   LO 4.2 The student is able to refine representations and models to explain how the subcomponents of a biological polymer and their sequence determine the properties of that polymer. [See SP 1.3] LO 4.3 The student is able to use models to predict and justify that changes in the subcomponents of a biological polymer affect the functionality of the molecule. [See SP 6.1, 6.4]