Ocean Biogeographic Information System Edward Vanden Berghe.

Slides:



Advertisements
Similar presentations
User Communities scenarios and achievements Marc Taconet Anton Ellenbroek FAO – Fisheries and Aquaculture Department Nicolas Bailly.
Advertisements

SpeciesLink The Brazilian experience on setting up a network Renato De Giovanni Centro de Referência em Informação Ambiental, CrIA.
Fossil Biodiversity Distribution as a Habitat Mapping Tool Erin Arnold Antarctic CRC/IASOS.
V Alyssa Rosemartin 1, Lee Marsh 1, Ellen Denny 1, Bruce Wilson USA National Phenology Network, Tucson, AZ; 2 - Oak Ridge National Laboratory, Oak.
WP3 Biomapping results to date WP3: NRM, CDF, CEFAS, DINARA, WCS Additional input: WP1, AquaMaps workgroup.
Integrating heterogeneous databases in the Ocean Biogeographic Information System Phoebe Y. Zhang J.F. Grassle Rutgers, the State University of New Jersey.
Integrating Biodiversity Data
Publish or perish? Linking Scratchpads and the new Biodiversity Data Journal for streamlining publication of botanical data D.N Koureas 1, L. Penev 2 &
ChEssBase Online database for species from deep-water chemosynthetic ecosystems integrated with OBIS Eva Ramirez-Llodra & Maria Baker National Oceanography.
OBIS Australia – Regional Node for the Ocean Biogeographic Information System (OBIS) OBIS Australia is an operational component of the Census of Marine.
Corals and sea anemones on line: a functioning biodiversity database D. G. Fautin R. W. Buddemeier University of Kansas: Department of Ecology and Evolutionary.
Ocean Biogeographic Information System Edward Vanden Berghe
SinBIOTA 2.0: Planning a New Generation Environmental Information System Prof. Carlos A. Joly & Prof.João Meidanis University of Campinas & Scylla Bioinformatics.
An On-line Atlas of Marine Diversity and a growing inventory of others.
BIS TDWG Conference 28 October 2013, Florence Documenting data quality in a global network: the challenge for GBIF Éamonn Ó Tuama, Andrea Hahn, Markus.
Ocean Biogeographic Information System Edward Vanden Berghe.
Ocean Biogeographic Information System. ‘Mission’ OBIS publishes primary data on marine species locations online through –It.
Winners and Losers in the Future Ocean Insights from Millions of Samples Rainer Froese IFM-GEOMAR, Kiel, Germany EDIT Symposium 18th January
Scratchpads Publication Module - A paradigm shift in publishing RBG Kew, Seminar,
RAPID ASSESSMENT PROGRAM (RAP) Terrestrial Ecosystems Freshwater Ecosystems Marine Ecosystems.
An Introduction to the NC Natural Heritage Data Explorer (NHDE) Allison Schwarz Weakley, Conservation Planner NC Natural Heritage Program North Carolina.
Introduction to OBIS-USA Biological Data, Applications, & Relationships March 14, 2011.
CENSUS OF MARINE LIFE Biodiversity in a rapidly changing World Patricia Miloslavich CoML Senior Scientist Universidad Simón Bolívar, Venezuela
Prepared for the 3rd SBB telecon 20 Mar 2012 Michele Walters, BI-01 task coordinator.
Ocean Biogeographic Information System (OBIS) - Outline of the global network and the Australian OBIS Node Tony Rees & Alicja Mosbauer CSIRO Marine & Atmospheric.
Dimitris Koureas, PhD Natural History Museum London Linking layers of biodiversity data: Informatics challenges for the long tail research RDA - Long Tail.
Online Data Flanders Marine Data & Information Centre InnovOcean site SeadataNet Annual Meeting, Madrid 2009.
Oceans Portal Workshop 30 th March 2004 Healthy oceans: cared for, understood and used wisely for the benefit of all, now and in the future healthy oceans:
Ocean Biodiversity Informatics conference Hamburg, 29/11-1/12/2004 Ocean Biodiversity Informatics International Conference on Marine Biodiversity Data.
Zope/Plone/Python for Research Ben Best OBISSEAMAP mapping marine megavertebrates
Potential conflicts I am going to assign you all a role, you must look up what your opinions on the ANWR development would be You will then have to talk.
IODE Ocean Data Portal - technological framework of new IODE system Dr. Sergey Belov, et al. Partnership Centre for the IODE Ocean Data Portal MINCyT,
Synthesis of Breakout Sessions Conclusions, Recommendations, Actions.
CENSUS OF MARINE LIFE All Program Meeting Mapping & Visualization Pat Halpin November 2007 Auckland, New Zealand.
Project Leaders Derek TittensorDerek Tittensor Edward Vanden BergheEdward Vanden Berghe Pat HalpinPat Halpin Boris WormBoris Worm Numerous other importantNumerous.
IODE Ocean Data Portal – from data access to integration platform Sergey Belov, Tobias Spears, Nikolai Mikhailov International Oceanographic Data and Information.
Census of Marine Zooplankton CMarZ is a taxonomically comprehensive, global- scale census of marine zooplankton, to produce accurate and complete information.
The Marine S ystème d’ I nformation sur la N ature et les P aysages CAML Workshop– Villefranche-sur-mer – 18 th May 2010.
GBIF Poland *** Current Status Piotr Tykarski University of Warsaw Polish GBIF Node EU GBIF NODES Meeting, Paris, 5.IV.2011.
NeMys: an evolving biological information system, a state of art Deprez, Tim (UGent) Vincx, Magda (UGent) Vanden Berghe, Edward (VLIZ) Mees, Jan (VLIZ)
1 The National Biological Information Infrastructure and Biodiversity Collections Annette Olson BCI meeting, Washington DC, January 28-29th, 2008.
 What, where, how many  Morphology, physiology…  Genetic diversity  Phenology  Water and nutrients  Species interactions  …  Trends Observations:
Jim Edwards Paddy Patterson Cyndy Parr CoML Synthesis meeting Long Beach, CA 1 February 2009.
Fábio Lang da Silveira – This talk on behalf of OBIS International Committee and OBIS North & South America Nodes USP – Zoology.
CPPS’s opportunities in the context off an Integrated Regional Ocean Policy Patricio A. Bernal PONTIFICIA UNIVERSIDAD CATOLICA DE CHILE.
Hellenic Centre for Marine Research (HCMR) MedOBIS - Ocean Biogeographic Information System for the Eastern Mediterranean and Black Sea.
Distributed Data Analysis & Dissemination System (D-DADS ) Special Interest Group on Data Integration June 2000.
BIOLOGICAL OCEANOGRAPHY and MARINE BIOLOGY Daphne G. Fautin Ecology and Evolutionary Biology and KU Natural History Museum and Biodiversity Research Center.
 Milestones  Framework  Synthesis  CoML Legacies  Synthesis  Tasks CoML Benchmarks & Goals.
Fire Emissions Network Sept. 4, 2002 A white paper for the development of a NSF Digital Government Program proposal Stefan Falke Washington University.
GBIFS Seminar with the Science Committee and the Nodes Strategy Group Analysis of the content published by the GBIF network – Better understanding what’s.
1 EMODNET pilot biological lot Francisco Hernandez, Simon Claus, Leen Vandepitte.
IABIN Species and Specimens Thematic Network (SSTN) IABIN Executive Committee/Coordinating Institution Meeting. Tierras Enamoradas, Costa Rica. February.
GLOBAL BIODIVERSITY INFORMATION FACILITY Vishwas Chavan Senior Programme Officer for DIGIT 10 th Meeting of the GBIF Participant Node Managers Committee.
Census of Marine Life A decade-long program ( ) to assess and explain marine life’s diversity, distribution & abundance - past, present & future.
OBIS. Current situation Working on new IT platform Present technology 8 years old Data ingestion going fine Including data quality Position, time Taxonomy.
GLOBAL BIODIVERSITY INFORMATION FACILITY Vishwas Chavan and Eric Gilman 10 th Meeting of the GBIF Participant Node Managers Committee 3 – 5 October 2009.
GLOBAL BIODIVERSITY INFORMATION FACILITY David Remsen Senior Programme Officer, ECAT 3 Oct th Nodes Meeting.
African Register of Marine Species AfReMas Leen Vandepitte On behalf of WoRMS data management team.
Cooperation and Interoperability Lenore Bajona, Robert M. Branton Ocean Tracking Network
Wednesday 25 June 2014 – FAO, Rome BiOnym A concept-mapping workflow for taxon names reconciliation iMarine Board 5 – 25 June 2014, FAO, Rome, Italy Fabio.
IODE Ocean Data Portal - technological framework of new IODE system Dr. Sergey Belov, et al. Partnership Centre for the IODE Ocean Data Portal.
COINAtlantic Expanding OBIS Canada partnerships and Visualizing OBIS Canada IPT Resources SG-OBIS-V May 25 – 27, 2016 UNESCO/IOC Project Office for IODE.
CYBER-GIS FOR SCIENTIFIC DISCOVERIES. Global Forest Change Hansen, M. C. et al (2013). High-Resolution Global Maps of 21st-Century Forest Cover Change.
Colombia: Capacity enhancement in Latin America
Flanders Marine Institute (VLIZ)
OBIS Data flows Dave Watts 8 March 2017 Data Centre, O&A.
Ocean Biogeographic Information System (OBIS)
7.b Marine alien species on EASIN
Presentation transcript:

Ocean Biogeographic Information System Edward Vanden Berghe

‘Mission’ OBIS publishes primary data on marine species locations online through –It facilitates data discovery and exploration by Searching by species, higher taxa, time, location, depth, data set Mapping observed occurrences Modelling of potential environmental range –Integrates data over marine themes Microbes to whales Genetics and morphology Poles to equator… –Enables data capture for re-use

OBIS in context Data integration component of CoML –Capturing and integrating data –Support the 2010 synthesis Marine component of GBIF –Fully inter-operable with GBIF standards –Extending with marine-specific elements Marine component of Species 2000 –World register of Marine Species (WoRMS) – Partner with FAO, UNEP (WCMC) Part of IOC/IODE Hosted by Rutgers University IMCS Funded by Sloan Foundation

OBIS functions More than a database, is a community of practice –Seeks out new datasets –Develops standards for data exchange and management –Develops software tools for online use Data system very visible product of community –Caches species distribution data from many databases –Creates taxonomic and geographic indices –Makes all data freely accessible online

Distribution of cod, Gadus morhua, shown as ‘c- squares’ map

Predicting distribution of invasive species, Pterois volitans

OBIS records viewed

OBIS number of records >700 datasets 21 million distribution records 147,000 names, 104,000 taxa Among the largest provider to GBIF Who’s providing data? –Regional OBIS Nodes –Census of Marine Life

Map of CoML field projects

CoML & Ocean Observing An example of how CoML technologies can be implemented in earth and ocean observing systems 7 seals tracked during 2-3 month summer feeding migrations Some animals dive 1000m

Location of RONs

Role of the regional nodes Ensuring true global cover for OBIS –Better serving local/regional needs Regional nodes are closer to the providers of the data –Local visibility for global OBIS data –Mobilise data from region –Technical assistance, also with standardisation –Specialised information products and services Data available on the regional network are also available on the global network –Increased global visibility for local data and data providers –Data sharing

RONs in CarSA Tropical and subtropical Western Atlantic –Fabio Lang da Silveira –Brazil, University of Sao Paulo Argentina (also very active in Antarctica) –Argentina, Centro Nacional Patagónico –Mirtha Lewis South-East Pacific –Chile, FONDAP COPAS –Ruben Escribano Active groups in Venezuela and Columbia Preliminary discussions in Mexico (UNAM)

Still a lot of work… We don’t know the total biodiversity –New species are discovered Selective sampling in geography –Mostly in surface waters –Temperate zones Selective sampling in taxonomy –Mostly big things, vertebrates

New species are discovered Data from

Geographical bias

Bias in depth: deeper than 2500m

Taxonomic bias Taxon# species# in OBIS% Cetaceans Seals… Fish Echinoderms Decapods Bryozoans

Analysis of OBIS data First attempts at diversity pattern on a global scale, with a large number of taxa –Previously either local or on one taxon (e.g. commercial large fish like tuna, forams…) –‘Safety in numbers’ Results not affected by idiosyncrasies of single taxon or study Results very preliminary, and need data cleaning and further checking –E.g. by artificially removing datasets from analysis

Species richness: ES(50)

Marine fish to be discovered Mora et al (2007). The completeness of taxonomic inventories for describing the global diversity and distribution of marine fishes. Proc. R. Soc. B, published on line Percentage completeness 1 100

Collaboration? Forging links between RONs and NODCs Assisting RONs with data mobilisation –Government agencies Marine Atlas –Biodiversity component –Creation of local portals integrating physical oceanography and biodiversity

Get in touch