Computational Tools for Population Biology Tanya Berger-Wolf, Computer Science, UIC; Daniel Rubenstein, Ecology and Evolutionary Biology, Princeton; Jared.

Slides:



Advertisements
Similar presentations
DELOS Highlights COSTANTINO THANOS ITALIAN NATIONAL RESEARCH COUNCIL.
Advertisements

Maines Sustainability Solutions Initiative (SSI) Focuses on research of the coupled dynamics of social- ecological systems (SES) and the translation of.
Ch:8 Design Concepts S.W Design should have following quality attribute: Functionality Usability Reliability Performance Supportability (extensibility,
NG-CHC Northern Gulf Coastal Hazards Collaboratory Simulation Experiment Integration Sandra Harper 1, Manil Maskey 1, Sara Graves 1, Sabin Basyal 1, Jian.
Energy-Efficient Computing for Wildlife Tracking: Design Tradeoffs and Early Experiences with ZebraNet Presented by Eric Arnaud Makita
Information and Communication Technology for Inquiry Based Science Education.
UNCERTML - DESCRIBING AND COMMUNICATING UNCERTAINTY Matthew Williams
Effective Coordination of Multiple Intelligent Agents for Command and Control The Robotics Institute Carnegie Mellon University PI: Katia Sycara
GOAL: UNDERSTAND CAUSAL AND INFLUENCE NETWORKS IN COMPLEX ADAPTIVE SYSTEMS IN ORDER TO CONTROL THEM.
Semantic Web and Web Mining: Networking with Industry and Academia İsmail Hakkı Toroslu IST EVENT 2006.
Web Mining Research: A Survey
4/27/2006Education Technology Presentation Visual Grid Tutorial PI: Dr. Bina Ramamurthy Computer Science and Engineering Dept. Graduate Student:
Architectural Design Establishing the overall structure of a software system Objectives To introduce architectural design and to discuss its importance.
Computational Thinking Related Efforts. CS Principles – Big Ideas  Computing is a creative human activity that engenders innovation and promotes exploration.
Semantic Web Technologies Lecture # 2 Faculty of Computer Science, IBA.
V. Chandrasekar (CSU), Mike Daniels (NCAR), Sara Graves (UAH), Branko Kerkez (Michigan), Frank Vernon (USCD) Integrating Real-time Data into the EarthCube.
 A set of objectives or student learning outcomes for a course or a set of courses.  Specifies the set of concepts and skills that the student must.
Problem Statement and Motivation Key Achievements and Future Goals Technical Approach Kouros Mohammadian, PhD and Yongping Zhang (PhD Candidate), CME,
Web Explanations for Semantic Heterogeneity Discovery Pavel Shvaiko 2 nd European Semantic Web Conference (ESWC), 1 June 2005, Crete, Greece work in collaboration.
Social Networking and On-Line Communities: Classification and Research Trends Maria Ioannidou, Eugenia Raptotasiou, Ioannis Anagnostopoulos.
Unit 2: Engineering Design Process
Ihr Logo Chapter 5 Business Intelligence: Data Warehousing, Data Acquisition, Data Mining, Business Analytics, and Visualization Turban, Aronson, and Liang.
Managing Service Metadata as Context The 2005 Istanbul International Computational Science & Engineering Conference (ICCSE2005) Mehmet S. Aktas
Publishing and Visualizing Large-Scale Semantically-enabled Earth Science Resources on the Web Benno Lee 1 Sumit Purohit 2
Travel Data Simulation and Transferability of Household Travel Survey Data Kouros Mohammadian, PhD and Yongping Zhang (PhD Candidate), CME, UIC Prime Grant.
Linked-data and the Internet of Things Payam Barnaghi Centre for Communication Systems Research University of Surrey March 2012.
Future & Emerging Technologies in the Information Society Technologies programme of European Commission Future & Emerging Technologies in the Information.
IPlant cyberifrastructure to support ecological modeling Presented at the Species Distribution Modeling Group at the American Museum of Natural History.
Design engineering Vilnius The goal of design engineering is to produce a model that exhibits: firmness – a program should not have bugs that inhibit.
Generic Adaptive Middleware for Behavior-driven Autonomous Services Generic Adaptive Middleware for Behavior-driven Autonomous Services Universität Duisburg-EssenETRA.
Knowledge Modeling, use of information sources in the study of domains and inter-domain relationships - A Learning Paradigm by Sanjeev Thacker.
Computational Tools for Population Biology Tanya Berger-Wolf, Computer Science, UIC; Daniel Rubenstein, Ecology and Evolutionary Biology, Princeton; Jared.
Ihr Logo Chapter 5 Business Intelligence: Data Warehousing, Data Acquisition, Data Mining, Business Analytics, and Visualization Turban, Aronson, and Liang.
Modeling Complex Dynamic Systems with StarLogo in the Supercomputing Challenge
Problem Statement and Motivation Key Achievements and Future Goals Technical Approach Tanya Berger-Wolf, Computer Science, UIC; Daniel Rubenstein, Ecology.
Interoperable Visualization Framework towards enhancing mapping and integration of official statistics Haitham Zeidan Palestinian Central.
UNCERTML - DESCRIBING AND COMMUNICATING UNCERTAINTY WITHIN THE (SEMANTIC) WEB Matthew Williams
CONCLUSION & FUTURE WORK Normally, users perform search tasks using multiple applications in concert: a search engine interface presents lists of potentially.
A Context Model based on Ontological Languages: a Proposal for Information Visualization School of Informatics Castilla-La Mancha University Ramón Hervás.
Futures Lab: Biology Greenhouse gasses. Carbon-neutral fuels. Cleaning Waste Sites. All of these problems have possible solutions originating in the biology.
Group-oriented Modelling Tools with Heterogeneous Semantics Niels Pinkwart COLLIDE Research Group University of Duisburg, Germany.
Biological Signal Detection for Protein Function Prediction Investigators: Yang Dai Prime Grant Support: NSF Problem Statement and Motivation Technical.
Ontology-Based Computing Kenneth Baclawski Northeastern University and Jarg.
The E ngineering Design Process Foundations of Technology The E ngineering Design Process © 2013 International Technology and Engineering Educators Association,
Biocomplexity Teacher Workshop May 31 – June 2, 2008 University of Puerto Rico.
GeoSpatial and GeoTemporal Informatics for dynamic and complex systems May Yuan.
The E ngineering Design Process Advanced Design Applications The E ngineering Design Process Teacher Resource – The First Five Days: Day 2 © 2014 International.
Resources and Reflections: Using Data in Undergraduate Geosciences Cathy Manduca SERC Carleton College DLESE Annual Meeting 2003.
First Responder Pathogen Detection System (FiRPaDS) Investigator: Bhaskar DasGupta, Computer Science Prime Grant Support: NSF (including a CAREER grant)
Dynamics of communities in two fission-fusion species, Grevy's zebra and onager Chayant Tantipathananandh 1, Tanya Y. Berger-Wolf 1, Siva R. Sundaresan.
Spatial ABM H-E Interactions, Lecture 4 Dawn Parker, George Mason University Notes on Grimm and Railsback Chapter 1, “Individual-based modeling and ecology”
Thinking behind the environment for Making Construals (MCE)
An Ontology-based Approach to Context Modeling and Reasoning in Pervasive Computing Dejene Ejigu, Marian Scuturici, Lionel Brunie Laboratoire INSA de Lyon,
First Responder Pathogen Detection System (FiRPaDS) Investigator: Bhaskar DasGupta, Computer Science, UIC with other investigators outside UIC Prime Grant.
Artificial Intelligence: Research and Collaborative Possibilities a presentation by: Dr. Ernest L. McDuffie, Assistant Professor Department of Computer.
Validity and utility of theoretical tools - does the systematic review process from clinical medicine have a use in conservation? Ioan Fazey & David Lindenmayer.
Adaptive Faceted Browsing in Job Offers Danielle H. Lee
From Use Cases to Implementation 1. Structural and Behavioral Aspects of Collaborations  Two aspects of Collaborations Structural – specifies the static.
CIMA and Semantic Interoperability for Networked Instruments and Sensors Donald F. (Rick) McMullen Pervasive Technology Labs at Indiana University
Wander Jager 1 An updated conceptual framework for integrated modelling of human decision making: The Consumat II.
High Risk 1. Ensure productive use of GRID computing through participation of biologists to shape the development of the GRID. 2. Develop user-friendly.
Instance Discovery and Schema Matching With Applications to Biological Deep Web Data Integration Tantan Liu, Fan Wang, Gagan Agrawal {liut, wangfa,
GoRelations: an Intuitive Query System for DBPedia Lushan Han and Tim Finin 15 November 2011
Cyberinfrastructure Overview of Demos Townsville, AU 28 – 31 March 2006 CREON/GLEON.
From Use Cases to Implementation 1. Mapping Requirements Directly to Design and Code  For many, if not most, of our requirements it is relatively easy.
Design Engineering 1. Analysis  Design 2 Characteristics of good design 3 The design must implement all of the explicit requirements contained in the.
Foundations of Technology The Engineering Design Process
What contribution can automated reasoning make to e-Science?
Data Warehousing and Data Mining
Foundations of Technology The Engineering Design Process
Presentation transcript:

Computational Tools for Population Biology Tanya Berger-Wolf, Computer Science, UIC; Daniel Rubenstein, Ecology and Evolutionary Biology, Princeton; Jared Saia, Computer Science, U New Mexico Supported by NSF Technical Approach Collect explicitly dynamic social data: sensor collars on animals, disease logs, synthetic population simulations, cellphone and communications Represent a time series of observation snapshots as a layered graph. Questions about persistence and strength of social connections and about criticality of individuals and times can be answered using standard and novel graph connectivity algorithms Validate theoretical predictions derived from the abstract graph representation by simulations on collected data and controlled experiments on real populations Key Achievements and Future Goals A formal computational framework for analysis of dynamic social interactions Valid and tested computational criteria for identifying Individuals critical for spreading processes in a population Times of social and behavioral transition Implicit communities of individuals Preliminary results on Grevy’s zebra and wild donkeys data show that addressing dynamics of the population produces more accurate conclusions Extend and test our framework and computational tools to other problems and other data Problem Statement and Motivation Of the three existing species of zebra, one, the Grevy's zebra, is endangered while another, the plains zebra, is extremely abundant. The two species are similar in almost all but one key characteristic: their social organization. Finding patterns of social interaction within a population has applications from epidemiology and marketing to conservation biology and behavioral ecology. One of the intrinsic characteristics of societies is their continual change. Yet, there are few analysis methods that are explicitly dynamic. Our goal is to develop a novel conceptual and computational framework to accurately describe the social context of an individual at time scales matching changes in individual and group activity. Zebra with a sensor collar A snapshot of zebra population and the corresponding abstract representation

Collaborative Research: Information Integration for Locating and Querying Geospatial Data Lead PI: Isabel F. Cruz (Computer Science). In collaboration with Nancy Wiegand (U. Wisconsin-Madison) Prime Grant Support: NSF Technical Approach Geospatial data are complex and highly heterogeneous, having been developed independently by various levels of government and the private sector Portals created by the geospatial community disseminate data but lack the capability to support complex queries on heterogeneous data Complex queries on heterogeneous data will support information discovery, decision, or emergency response Data integration using ontologies Ontology representation Algorithms for the alignment and merging of ontologies Semantic operators and indexing for geospatial queries User interfaces for Ontology alignment Display of geospatial data Create a geospatial cyberinfrastructure for the web to Automatically locate data Match data semantically to other relevant data sources using automatic methods Provide an environment for exploring, and querying heterogeneous data for emergency managers and government officials Develop a robust and scalable framework that encompasses techniques and algorithms for integrating heterogeneous data sources using an ontology-based approach Problem Statement and Motivation Key Achievements and Future Goals