MGI Updates Joel Richardson April 4-5, 2012GMOD Meeting.

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Presentation transcript:

MGI Updates Joel Richardson April 4-5, 2012GMOD Meeting

MGI 5.0 Motivation: – Get off Sybase – Modernize infrastructure Features: – Frontend db no longer a clone of backend db – Translation step (the Mover) – Engines: Postgres, Lucene/Solr (performance!) – Server: Jboss, SpringMVC – Client: AJAX, YUI. Pagable/exportable results. Web services. – Backend (master) remains on Sybase for now When: – Next week April 4-5, 2012GMOD Meeting

IMSR 3.0 See previous slide Completely off Sybase (frontend and backend) Frontend completely Lucene/Solr driven. (Blazingly fast) New look April 4-5, 2012GMOD Meeting

MouseMine Part of the InterMOD consortium Initial version will contain a subset of MGI, plus a little more: – Features (mouse&human); Coordinates; Orthologies; Synteny blocks; Alleles; Strains and Genotypes; Annotations (GO, MP, Disease); Pubs; Cross refs; – Updated weekly (in sync with MGI) Status: – Hired a developer – Completed several rounds of prototyping – Currently setting up servers in local cloud – Anticipate first public release: Q3 this year April 4-5, 2012GMOD Meeting

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