Miyasaka Lab. Ikegami Takahiro 100nm Ke Xu, H. P. Babcock, X. Zhuang, Nature Methods, 2012, 9, 185–188. Sub-diffraction limited point spread function achieved.

Slides:



Advertisements
Similar presentations
Adjusting a Microscope 1Center components on optic axis 2Focus objective 3Focus condenser 4Adjust illumination lamp voltage (intensity) iris diaphragm.
Advertisements

Fluorescence microscopy II Advanced approaches
Microscopy Do you want a footer?.
Single-image molecular analysis for accelerated fluorescence imaging Yan Mei Wang Department of Physics Washington University in St. Louis.
Lecture 11. Microscopy. Optical or light microscopy involves passing visible light transmitted through or reflected from the sample through a single or.
Fire Protection Laboratory Methods Day
Breaking the Diffraction Barrier: Super-Resolution Imaging of Cells Edgar Ferrer-Lorenzo, Nicole Gagnon, Anna Torre 1.
Dynamics and Mechanisms of the Multiphoton Gated Photochromic Reaction of the Highly Fluorescent Diarylethene Derivatives Miyasaka Lab Kunishi Tomohiro.
100nm Ke Xu, H. P. Babcock, X. Zhuang, Nature Methods. 2012, 9, 185–188. Sub-diffraction limited point spread function achieved by using photo-switchable.
R. Hui Photonics for bio-imaging and bio- sensing Rongqing Hui Dept. Electrical Engineering & Computer Science, The University of Kansas, Lawrence Kansas.
FLIM - Detector ( Fluorescence lifetime imaging) — Molecular interraction (FRET) — intracellular pH etc. etc etc Pulsed IR-laser ( Multiphoton exitation)
Three-Dimensional Super-Resolution Imaging by Stochastic Optical
Short pulses in optical microscopy Ivan Scheblykin, Chemical Physics, LU Outline: Introduction to traditional optical microscopy based on single photon.
1.SHRIMP – Super High Resolution IMaging with Photobleaching 2a. PALM – Photoactivated Localization Microscopy b. STORM – Stochastic Optical Reconstruction.
Super-Resolution Fluorescence Microscopy
Micro PIV  An optical diagnostic technique for microfluidics (e.g. MEMS, biological tissues, inkjet printer head) Requirements: Measure instantaneously.
“Breaking the diffraction barrier in fluorescence microscopy at low light intensities by using reversibly photoswitchable proteins” M. Hoffmann, C. Eggeling,S.
STED: Nanoscale 3D Optical Imaging Digvijay Raorane & Arun Majumdar Department of Mechanical Engineering Department of Materials Science University of.
Sub-diffraction-limit imaging by Stochastic Optical Reconstruction Microscopy (STORM) Michael J. Rust, Mark Bates, Xiaowei Zhuang Harvard University Published.
Microscopy is about a combination of resolution (seeing smaller and smaller things), and contrast (seeing what you want to see). Both aspects have recently.
MICROSCOPES Light (visible) Fluorescent U-V Electron Monocular
Review of FIONA/PALM/STORM How to make photoactivatable fluorophores How to get 3-D Measurements Intro to STED (?)
PALM/STORM How to get super-resolution microscopy.
Quiz 10/04/14 1. Recently, it has been possible to increase the accuracy of locating a single fluorophore (see diagram). What factors are critical to how.
Super-resolution-nanoscopy Resolvable volumes obtained with current commercial super-resolution microscopes. Schermelleh L et al. JCB 2010;190:
I - PALM Super-resolution Methods. Detecting A Single Fluorescent Molecule? Size: ~ 1nm Absorption Cross-section: ~ cm 2 Quantum Yield: ~1 Absorbance.
Evaluation of Microscopic Inhomogeneity in Solids Using Single Molecules as Nanometer-sized Probes Yoko Miyamoto Miyasaka Lab.
Biophotonics lecture 7. December 2011
TIRF Total Internal Reflection Fluorescence Microscopy specialized fluorescence microscopy technique specifically images a very thin optical section (50-250nm)
NEU259 Advanced Light Microscope Techniques Hiroyuki Hakozaki National Center for Microscopy and Imaging Research University of California, San Diego.
The 5 I’s of Culturing Microbes
Living Organisms Consist of Cells State the resolution and magnification that can be achieved by a light microscope Explain the difference between magnification.
Honors Microbiology: Chapter 3 Microscopy and Staining
Naomi Kinjal Asaad Binoy
Today’s take-home lessons (i.e. what you should be able to answer at end of lecture) 1.Twisting– anharmonicity of DNA 2.Resolution (Limited by Heisenberg,
Fluorescence Techniques
Super-Resolution Optical Microscopy Bo Huang Light Microscopy May 10, 2010.
More on smFRET and high-resolution microscopy. You give a (brief) talk? (4 per class: 10 minute.) Apr 21 Apr 28 May 5.
Stochastic Optical Reconstruction Microscopy (STORM)
1.HW due today. (HW not turned back today because a person is sick and still hasn’t turned it in; will return Next Monday) 2. Another HW assigned today,
FEMTOSECOND LASER FABRICATION OF MICRO/NANO-STRUCTURES FOR CHEMICAL SENSING AND DETECTION Student: Yukun Han MAE Department Faculty Advisors: Dr. Hai-Lung.
Miyasaka Lab. ARAI Yuhei 1. Ⅰ. Introduction ・ Single-Molecule Measurements (SMM) ・ Microscope Ⅱ. Applications of single molecule fluorescence imaging.
1 2. Focusing Microscopy Object placed close to secondary source: => strong magnification The smaller the focus, the sharper the image! Spectroscopy, tomography.
Two-Focus Fluorescence Correlation  Spectroscopy: A New Tool for Accurate and Absolute Diffusion Measurements Jörg Enderlein et al., ChemPhysChem, 8, 433–443.
Single Molecule Spectroscopy (SMS) 2010/6/9 Miyasaka Lab. Iida Atsushi.
Single atom manipulations Benoît Darquié, Silvia Bergamini, Junxiang Zhang, Antoine Browaeys and Philippe Grangier Laboratoire Charles Fabry de l'Institut.
Microscopes Compound Bright-Field Light Microscope
Miysaka Lab. Keisuke Yamada Alexandros Pertsinidis, Yunxiang Zhang & Steven Chu.
Functional cellular imaging by light microscopy MICROSCOPIES.
Connection Symposium Toronto, ON May 8, 2009 Meta-Screen for High Resolution Optical Microscopy Yan Wang*, Amr S. Helmy, & George V. Eleftheriades University.
Molecular Cell Biology Light Microscopy in Cell Biology Cooper Modified from a 2010 lecture by Richard McIntosh, University of Colorado.
1.HW on rough-draft of your 5 minute oral presentation due today at 5pm. 2.Another HW (regular, written assignment due Wednesday in class). “The students.
Today’s Announcements
Fluorescence You can get beautiful pictures
Imaging Seeing things with Light (& Electron Microscopes) Fluorescence. What is it (amplitude, time-scale)?
Quiz (2/20/08, Chpt 3, ECB) 1. A chemical process where there is a net gain of electrons is called _______________. A chemical process where there is a.
Electron Microscope. How do they work Instead of using light they fire a beam of electrons (which have a wavelength less than 1nm compared to light which.
Designing a Microscopy Experiment Kurt Thorn, PhD Director, Image from Susanne Rafelski, Marshall lab.
Date of download: 5/28/2016 Copyright © 2016 SPIE. All rights reserved. The schematic of the setup: (a) the multiphoton laser path and (b) the laser path.
Stochastic Optical Reconstruction Microscopy (STORM)
Presented by: Ziah Dean Date: November 30, 2010 Course: EE 230.
Microscopy Dr. Bhavesh Patel Principal V.P. and R.P.T.P. Science College Vallabh Vidyanagar –
New Imaging Modalities of Optical Microscopy
Principles and applications of optical switching assisted imaging
Breaking the Diffraction Barrier: Super-Resolution Imaging of Cells
Francesca Pennacchietti, Travis J. Gould, Samuel T. Hess 
Volume 89, Issue 2, Pages (August 2005)
Super-resolution Microscopy Approaches for Live Cell Imaging
Samuel T. Hess, Thanu P.K. Girirajan, Michael D. Mason 
Fig. 3 Mechanism and result of the super-resolution RLP.
Presentation transcript:

Miyasaka Lab. Ikegami Takahiro 100nm Ke Xu, H. P. Babcock, X. Zhuang, Nature Methods, 2012, 9, 185–188. Sub-diffraction limited point spread function achieved by using photo-switchable fluorescence of diarylethene derivatives

I. Background Microscopy Fluorescence Microscopy Super-resolution Microscopy ( STED, PALM & STORM ) II. My work Principle Simulation Experience III. Summary IV. Future work

I. Background Microscopy Fluorescence Microscopy Super-resolution Microscopy ( STED, PALM & STORM ) II. My work Principle Simulation Experience III. Summary IV. Future work Have you ever used a microscope?

20 μm Shigeru Amemiya, Jidong Guo, Hui Xiong, Darrick A. Gross, Anal Bioanal Chem, 2006, 386, 458– nm 5 μm 0.5 μm Scanning Electron Microscopy ( SEM ) Atomic Force Microscopy ( AFM ) Fluorescence Microscopy Various Microscopy L. Schermelleh, R. Heintzmann, H. Leonhard, THE JOURNAL OF CELL BIOLOGY, 2010, 190, S. Sharma, R. W. Johnson, T. A. Desai, Biosensors and Bioelectronics, 2004, 20,

Dye Sample example Imaging Shtengel et al., PNAS. 2009, 10,1073. Fluorescence microscopy Observation target ・ Biological tissue ・ Polymer film CCD camera Laser Scanning Laser Glass SiO 2 Trajectory of dye in PolyHEA Arai Yuhei, graduation thesis, D trajectory of dye in PolyHEA Taga Yuhei, thesis for master degree, 2014

・ Internal observation ・ Contactless ・ Time resolution Advantage of fluorescence microscopy Spatial resolution Fluorescence Microscopy λ/2 ( ≧ 200 nm ) Scanning Electron Microscopy ( SEM ) Atomic Force Microscopy ( AFM ) ( ≧ 0.1 nm ) << 0.5 μm 5 μm L. Schermelleh, R. Heintzmann, H. Leonhard, THE JOURNAL OF CELL BIOLOGY, 2010, 190,

Resolution of fluorescence microscopy Low Resolution High Resolution Large LASER Spot Small LASER Spot Point Spread Function ( PSF ) Fluorescence PSF Objective smaller than diffraction limit Super-Resolution Microscopy

STED ( Stimulated Emission depletion ) Super-Resolution Microscopy h(v) v Δν FWHM Dye : RhodamineB λ STED = 600 nm : STED beam wavelength λ exc = 490 nm : Ecitation beam wavelength N.A.= 1.4 : Numerical aperture of objective FWHM of effective PSF 50 nm S. W. Hell, J. Wichmann, OPICS LETTERS. 1994, 19, 11. STED beam Excitation beam

PALM ( PhotoActivated Localization Microscopy ) & STORM ( Stochastic Optical Reconstruction Microscopy ) Super-Resolution Microscopy CCD camera B. Huang, W. Wang, M. Bates, X. Zhuang, Science, 2008, 319, Low Resolution Fluorescence PSF Localization (A) Normal PALM & STORM Normal (B) STORM

I. Background Microscopy Fluorescence Microscopy Super-resolution Microscopy ( STED, PALM & STORM ) II. My work Principle Simulation Experience III. Summary IV. Future work

diarylethene derivative (DE1) Fluorescent UV (Φ oc = 0.43) Closed-form Open-form Vis. (Φ co = 1.6×10 -4 ) Φ F =0.88 non-Fluorescent Super-resolution by using photo-switchable fluorescent molecule

PSF Objective Dye (DAE1) Principle Visible position is shifted. UV Vis. Effective fluorescent spot size is changed by modulating a overlap of UV and Visible light. ※ UV Vis. Closed-form Open-form Fluorescent

Relation between Inter-spot distance & FWHM Vis. position = 0 nm Vis. position= nm FWHM = 230 nm FWHM = 40 nm ※ FWHM : 半値全幅 Simulation Laser & Fluorescence Intensity Distribution parameter Φ : Ring reaction yield I : Intensity C : Concentration Laser Dyes PMMA cover glass

Fluorescent intensity EFS by Simulation Experimental result Guest DE1 Host PMMA ※ Position of visible light was shifted to left. 1μm Parameter Sample preparation Intensity ( UV & Vis.) Irradiated position (Vis.) Relation between Inter-spot distance & FWHM

Stage scan imaging with APD A B C D E Measure photon number ※ Depended on the distribution of laser intensity single molecule PMMA cover glass Condition Principle APD Laser A B C D E Distribution of laser intensity Objective Stage ・ a few dye in several micrometers square ・ only a dye in laser light ・ Laser intensity is measured. ・ A fluorescence spot which is smaller than diffraction limit can be got. ・ The resolution is depended on the laser spot size and the step length of a stage. Optical setup Lens DM Pinhole Objective Stage

FWHM = 772 nm UV & Vis. completely overlaped. 300nm FWHM = 241 nm UV Vis. UV 300nm Stage scan imaging with APD UV & Vis. partly overlaped. Laser spot model Stage scan imaging Distribution of photon number

Summary ・ I explained about super-resolution microscopes such as STED, STORM, and PALM. ・ We observed that the smaller UV & Visible light overlap was, the smaller a fluorescence spot size became. UV Vis.

UV beam Visible donuts beam EFS Future work ・ Smaller spots than diffraction limit are made. ・ The visible donuts beam is used, and isotropic fluorescent spots is made. ・ Biological tissues or structures of polymer are modified by DE1, and they are observed.