The BioBox Initiative: Bio-ClusterGrid Maddie Wong Technical Marketing Engineer Sun APSTC – Asia Pacific Science & Technology Center.

Slides:

Advertisements

Similar presentations

PRAGMA BioSciences Portal Raj Chhabra Susumu Date Junya Seo Yohei Sawai.

Advertisements

Web: OMII-UK LiveCD Demonstrations – Providing Access to Computational Resources for Researchers AHM 2009 Steve Crouch,

A thin-client, flexible Fortis rendering engine. What is Fortis Portal Fortis Portal is a rendering engine with a simplistic, thin-client interface designed.

1 Software & Grid Middleware for Tier 2 Centers Rob Gardner Indiana University DOE/NSF Review of U.S. ATLAS and CMS Computing Projects Brookhaven National.

6/2/20071 Grid Computing Sun Grid Engine (SGE) Manoj Katwal.

Sun Grid Engine Grid Computing Assignment – Fall 2005 James Ruff Senior Department of Mathematics and Computer Science Western Carolina University.

Introduction to windows operating system i

The Open Grid Service Architecture (OGSA) Standard for Grid Computing Prepared by: Haoliang Robin Yu.

High Performance Computing (HPC) at Center for Information Communication and Technology in UTM.

01 Introduction to Java Technology. 2 Contents History of Java What is Java? Java Platforms Java Virtual Machine (JVM) Java Development Kit (JDK) Benefits.

DNN LOVES JENKINS FOR CONTINUOUS INTEGRATION

Rocks cluster : a cluster oriented linux distribution or how to install a computer cluster in a day.

Maintaining a Microsoft SQL Server 2008 Database SQLServer-Training.com.

DTS Web Hosting, Rates And Services Web Hosting Internet Services Unit May 2006.

Cloud computing is the use of computing resources (hardware and software) that are delivered as a service over the Internet. Cloud is the metaphor for.

The BioBox Initiative: Bio-ClusterGrid Gilbert Thomas Associate Engineer Sun APSTC – Asia Pacific Science & Technology Center.

Using the WDK for Windows Logo and Signature Testing Craig Rowland Program Manager Windows Driver Kits Microsoft Corporation.

NASA/ESA Interoperability Efforts CEOS Subgroup - CINTEX Alexandria, Sept 12, 2002 Ananth Rao Yonsook Enloe SGT, Inc.

Gilbert Thomas Grid Computing & Sun Grid Engine “Basic Concepts”

Current Job Components Information Technology Department Network Systems Administration Telecommunications Database Design and Administration.

Introduction Purpose This course describes the process of installing the KPIT GNU toolchain on your PC. Objective Learn how easy it is to get information.

Overview of the Computer Resource Team (CRT) Blaise Barney (LLNL) Rob Cunningham (LANL) Barbara Jennings (Sandia) PSAAP Kickoff Meeting July 8, 2008 Albuquerque,

Nightly Releases and Testing Alexander Undrus Atlas SW week, May

Rocks ‘n’ Rolls An Introduction to Programming Clusters using Rocks © 2008 UC Regents Anoop Rajendra.

March 3rd, 2006 Chen Peng, Lilly System Biology1 Cluster and SGE.

Grids and Portals for VLAB Marlon Pierce Community Grids Lab Indiana University.

Configuration Management (CM)

CSE 548 Advanced Computer Network Security Document Search in MobiCloud using Hadoop Framework Sayan Cole Jaya Chakladar Group No: 1.

China Grid Activity on SIG Presented by Guoqing Li At WGISS-21, Budapest 8 May, 2006.

BOSCO Architecture Derek Weitzel University of Nebraska – Lincoln.

Active Directory Harikrishnan V G 18 March Presentation titlePage 2 Agenda ► Introduction – Active Directory ► Directory Service ► Benefits of Active.

MyBLAST standalone installation Lab of Systems Biology & Network Biology website Download link. 1.Click the Download link.

CSF4 Meta-Scheduler Name: Zhaohui Ding, Xiaohui Wei

The huge amount of resources available in the Grids, and the necessity to have the most up-to-date experimental software deployed in all the sites within.

Presented by: La Min Htut Saint Petersburg Marine Technical University Authors: Alexander Bogdanov, Alexander Lazarev, La Min Htut, Myo Tun Tun.

The Roadmap to New Releases Derek Wright Computer Sciences Department University of Wisconsin-Madison

1 Media Grid Initiative By A/Prof. Bu-Sung Lee, Francis Nanyang Technological University.

Grid-Powered Scientific & Engineering Applications Ho Quoc Thuan INSTITUTE OF HIGH PERFORMANCE COMPUTING.

NEES Cyberinfrastructure Center at the San Diego Supercomputer Center, UCSD George E. Brown, Jr. Network for Earthquake Engineering Simulation NEES TeraGrid.

Module 2 Part I Introduction To Windows Operating Systems Intro & History Introduction To Windows Operating Systems Intro & History.

Cyber Security Review, April 23-24, 2002, 0 Operated by the Southeastern Universities Research Association for the U.S. Depart. Of Energy Thomas Jefferson.

F Drag and Drop Controls Display and Builder (Synoptic Display) Timofei Bolshakov, Andrey Petrov Fermilab Accelerator Controls Department March 26, 2007.

Portal Update Plan Ashok Adiga (512)

Introduction to Taverna Online and Interaction service Aleksandra Pawlik University of Manchester.

Package & Deploy. OBJECTIVES Package Deploy Way to package.

ClearQuest XML Server with ClearCase Integration Northwest Rational User’s Group February 22, 2007 Frank Scholz Casey Stewart

Development of e-Science Application Portal on GAP WeiLong Ueng Academia Sinica Grid Computing

Module 1: Introduction to Administering Accounts and Resources.

Linux Operations and Administration

The Gateway Computational Web Portal Marlon Pierce Indiana University March 15, 2002.

Page: 1 Sun Confidential: Internal Use and Authorized Partners Only OpenSolaris and the Bio-OpenSolaris Software Project Gilbert Thomas Sun Microsystems,

10 March Andrey Grid Tools Working Prototype of Distributed Computing Infrastructure for Physics Analysis SUNY.

Improving the Research Bootstrap of Condor High Throughput Computing for Non-Cluster Experts Based on Knoppix Instant Computing Technology RIKEN Genomic.

 Project Team: Suzana Vaserman David Fleish Moran Zafir Tzvika Stein  Academic adviser: Dr. Mayer Goldberg  Technical adviser: Mr. Guy Wiener.

The LGI Pilot job portal EGI Technical Forum 20 September 2011 Jan Just Keijser Willem van Engen Mark Somers.

Linux Systems Administration 101 National Computer Institute Sep

Best Way to Learn Selenium Course in Online. Looking to learn best testing tool? If your preference is selenium testing then your choice is perfect. The.

Packaging and Deploying Windows Applications

Getting Started with... Business Partner Express

Supporting Windows 8.1 Krystle Portocarrero | Training Experts Inc.

Dag Toppe Larsen UiB/CERN CERN,

Dag Toppe Larsen UiB/CERN CERN,

The Open Grid Service Architecture (OGSA) Standard for Grid Computing

Module 1: Introduction to Administering Accounts and Resources

The ETICS Build and Test Service

TYPES OF SERVER. TYPES OF SERVER What is a server.

IBM NETEZZA DBA online Training at GoLogica Technologies

MIK 2.1 DBNS - introduction to WS-PGRADE, 2013

HOW TO DOWNLOAD THE LATEST VERSION OF AVAST ANTIVIRUS FOR FREE?

Microsoft Virtual Academy

Presentation transcript:

The BioBox Initiative: Bio-ClusterGrid Maddie Wong Technical Marketing Engineer Sun APSTC – Asia Pacific Science & Technology Center

02 April 2004 ©Maddie Wong, Technical Marketing Engineer, Sun APSTC 1 Agenda Bio-ClusterGrid: Introduction Bio-ClusterGrid: Benefits Solaris 9 Operating Environment Sun Grid Engine (SGE) Grid Engine Portal (GEP) Applications on Bio-ClusterGrid Current and Future Developments Demonstration

02 April 2004 ©Maddie Wong, Technical Marketing Engineer, Sun APSTC 1

02 April 2004 ©Maddie Wong, Technical Marketing Engineer, Sun APSTC 1 Bio-ClusterGrid: Introduction Grid-enabled Bioinformatics Package Consists of 4 major components –Solaris 9 Operating Environment (April 2003 version) –Collection of 28 Bioinformatics applications pre- installed and pre-configured –Sun Grid Engine –Grid Engine Portal

02 April 2004 ©Maddie Wong, Technical Marketing Engineer, Sun APSTC 1 Bio-ClusterGrid: Benefits Fast setup (2 ½ – 3 hours) –Installation of Solaris 9 Operating System –Installation of the 28 Bioinformatics applications –Activation of Sun Grid Engine –Installation and Activation of Grid Engine Portal

02 April 2004 ©Maddie Wong, Technical Marketing Engineer, Sun APSTC 1 Bio-ClusterGrid: Benefits Compared to Manual Installation –Installation Of Solaris 9 ( 30 – 40 minutes) –Downloading, compiling and installation of 28 bioinformatics applications (1 week) –Installation and Configuration of Sun Grid Engine (1 day) –Installation and Configuration of Grid Engine Portal ( 1 day)

02 April 2004 ©Maddie Wong, Technical Marketing Engineer, Sun APSTC 1 Bio-ClusterGrid: Benefits Huge savings in time for administrators No need to deal with the complexity of compilation : compilation errors, checking for installing dependencies SGE and GEP installations can be confusing for unfamiliar user

02 April 2004 ©Maddie Wong, Technical Marketing Engineer, Sun APSTC 1 Solaris 9 Operating Environment Latest version of Sun Solaris Supports GNOME 2.0 Desktop Environment Improvements in Performance, Security

02 April 2004 ©Maddie Wong, Technical Marketing Engineer, Sun APSTC 1 GNOME 2.0 Desktop Environment

02 April 2004 ©Maddie Wong, Technical Marketing Engineer, Sun APSTC 1 Sun Grid Engine Distributed Resource Management Software Provides load balancing and resource management Supports running of parallel applications over a cluster

02 April 2004 ©Maddie Wong, Technical Marketing Engineer, Sun APSTC 1 Grid Engine Portal Integrated into Sun One Portal Server Provides a web interface to some applications running on Sun Grid Engine Remote access from anywhere, anytime and any computer with a Java-enabled browser. For users who dislike Command-Line Interface (CLI)

02 April 2004 ©Maddie Wong, Technical Marketing Engineer, Sun APSTC 1 Grid Engine Portal Job Submission done through customised forms for each application View results of jobs online and/or download to local machine. user when job is completed.

02 April 2004 ©Maddie Wong, Technical Marketing Engineer, Sun APSTC 1 Grid Engine Portal

02 April 2004 ©Maddie Wong, Technical Marketing Engineer, Sun APSTC 1 Submitting BLAST job using GEP

02 April 2004 ©Maddie Wong, Technical Marketing Engineer, Sun APSTC 1 Blast Job Output on GEP

02 April 2004 ©Maddie Wong, Technical Marketing Engineer, Sun APSTC 1

02 April 2004 ©Maddie Wong, Technical Marketing Engineer, Sun APSTC 1 Current Development ● Linux and Solaris x86 Versions of Bio- ClusterGrid Future Developments ● Bio-Server (Bioinformatics databases server) ● Improvements to GEP interface in terms of functionality and user-friendliness

02 April 2004 ©Maddie Wong, Technical Marketing Engineer, Sun APSTC 1 BioBox Engineering Team ● Headed by Simon See ● Gilbert Thomas ● Maddie Wong ● Deepak Jeevan Kumar ● APSTF Interns (IIT Delhi, India) For more info, visit

Demonstration For more queries