Health Datasets in Spatial Analyses: The General Overview Lukáš MAREK Department of Geoinformatics, Faculty.

Slides:



Advertisements
Similar presentations
Sampling Design, Spatial Allocation, and Proposed Analyses Don Stevens Department of Statistics Oregon State University.
Advertisements

The methodology used for the 2001 SARs Special Uniques Analysis Mark Elliot Anna Manning Confidentiality And Privacy Group ( University.
Public Health Event Reporting: Lecture Template
Spatial Analysis and GIS Stephanie Watson Marine Mapping User Group (MMUG) Coordinator California Department of Fish and Game.
The Geographical and Temporal Distribution of Vital Statistics in Champaign County, from 2005 to 2009 Lan Luo Supervisor: Awais Vaid (C-UPHD) Dr.Ruiz (University.
GIS and Spatial Statistics: Methods and Applications in Public Health
Application for presenting census results in the context of statistical data confidentiality in Poland Amelia Wardzińska-Sharif Central Statistical Office.
Spatial analysis in the next decade Department of Urban Engineering University of Tokyo Yukio Sadahiro.
Department of Geography University of Portsmouth Fundamentals of GIS: What is GIS? Dr. Ian Gregory, Department of Geography, University of Portsmouth.
SEARO –CSR Early Warning and Surveillance System Module GIS in EWAR.
Biostatistics Frank H. Osborne, Ph. D. Professor.
GIS in Spatial Epidemiology: small area studies of exposure- outcome relationships Robert Haining Department of Geography University of Cambridge.
Map to Geographic Information Systems (GIS) Maps as layers of geographic information Desire to ‘automate’ map Evolution of GIS –Create automated mapping.
Why Geography is important.
Introduction to the Use of Geographic Information Systems in Public Health Elio Spinello, MPH California State University, Northridge.
Conclusion of Geography’s Nature and Perspective
GEOMATICS AND GEOINFORMATICS IN MODERN INFORMATION SOCIETY PROJECTION OF NEW TRENDS INTO THEIR CURRICULA AT THE UNIVERSITY OF WEST BOHEMIA IN PILSEN Jiří.
Seminar on “Spatial statistics” Session 1: Use of statistical grids in official statistics Conference of European Statisticians, Paris, Fifty-eighth plenary.
The Spatial Scan Statistic. Null Hypothesis The risk of disease is the same in all parts of the map.
1 REGIO gis The use of geostatistics for the analysis of Europe’s regions Hugo Poelman European Commission – DG Regional Policy
Spatial Statistics Applied to point data.
Exploratory Analysis of Disease Data & Introduction to UNC’s GIS Reference Library Prepared originally by Kristen Hampton Updated and maintained by Ben.
Exploratory Analysis of Disease Data & Introduction to UNC’s GIS Reference Library.
Study Designs Afshin Ostovar Bushehr University of Medical Sciences Bushehr, /4/20151.
Igor Kuzma, Statistical Office of the Republic of Slovenia Tomaž Žagar, Geodetic Institute of Slovenia GIS Portal – dissemination of geostatistics
TerraPop Vision An organizational and technical framework to preserve, integrate, disseminate, and analyze global-scale spatiotemporal data describing.
CITY CENTER DELIMITATION Olomouc case study Jaroslav Burian First StatGIS conference.
Challenges in adjusting statistical systems to support analysis of climate change Meeting of climate change related statistics for producers and users.
Spatial Data Analysis Yaji Sripada. Dept. of Computing Science, University of Aberdeen2 In this lecture you learn What is spatial data and their special.
Support the spread of “good practice” in generating, managing, analysing and communicating spatial information Introduction to GIS for the Purpose of Practising.
Chapter 13: Correlation An Introduction to Statistical Problem Solving in Geography As Reviewed by: Michelle Guzdek GEOG 3000 Prof. Sutton 2/27/2010.
Role of Spatial Database in Biodiversity Conservation Planning Sham Davande, GIS Expert Arid Communities Technologies, Bhuj 11 September, 2015.
Applications of Spatial Statistics in Ecology Introduction.
GEOG3025 Geographical referencing and the modifiable areal unit problem.
GEOG 370 Christine Erlien, Instructor
1 OLAP for heterogeneous socio-economic data – the challenge of integration, analysis and crime prevention: a Czech case study. Jiří HORÁK, Igor IVAN,
So, what’s the “point” to all of this?….
Sharing experience Attribution (by) Licensees may copy, distribute, display and perform the work and make derivative works based on it only if they give.
Creating Open Data whilst maintaining confidentiality Philip Lowthian, Caroline Tudor Office for National Statistics 1.
Analyzing the Geospatial Imbalance of the Primary Care Physician Labor Supply in the Contiguous United States By Russ Frith University of W. Florida Capstone.
GIS September 27, Announcements Next lecture is on October 18th (read chapters 9 and 10) Next lecture is on October 18th (read chapters 9 and 10)
Lab for Remote Sensing Hydrology and Spatial Modeling Dept of Bioenvironmental Systems Engineering National Taiwan University 1/45 GEOSTATISTICS INTRODUCTION.
Descriptive study design
Technical Details of Network Assessment Methodology: Concentration Estimation Uncertainty Area of Station Sampling Zone Population in Station Sampling.
INTERACTIVE WELL- BEING WEBMAP PROJECT CITY OF TURKU FINLAND 5th EC-GIS Workshop, "GIS OF TOMORROW" Stresa, Italy, June 1999 Jukka Nikulainen /
GIS Software Applications in Epidemiology Marcus Liscombe Brent Croft GISC GIS MANAGEMENT AND IMPLEMENTATION.
Monday, June 23, 2008Slide 1 KSU Females prospective on Maternity Services in PHC Maternity Services in Primary Health Care Centers : The Females Perception.
Minding HIPAA & IRBs Cave Fatuis!. Elements HIPAA definitions of identifiable data Reducing risk of identifying people Research and IRB approval Business.
INTRODUCTION Despite recent advances in spatial analysis in transport, such as the accounting for spatial correlation in accident analysis, important research.
Introduction to General Epidemiology (2) By: Dr. Khalid El Tohami.
Czech Technical University in Prague Faculty of Transportation Sciences Department of Transport Telematics Pavel Hrubeš Geographical Information Systems.
Lecture 24: Uncertainty and Geovisualization
Research using Registries
Introduction to Spatial Statistical Analysis
Present: Disease Past: Exposure
Qualitative research: an overview
Chapter 2: The Pitfalls and Potential of Spatial Data
Statistical Data Analysis
Meng Lu and Edzer Pebesma
Statistical surfaces: DEM’s
Marja Tammilehto-Luode, Statistics Finland
Lecture 6 Implementing Spatial Analysis
European Commission EUROSTAT E4
Vanda Nunes de Lima 18th June 2009
Technical guidance for grid based provision of data for MSFD reporting
Disclosure Avoidance: An Overview
Statistical Data Analysis
Surveillance of Tuberculosis
USING SECONDARY DATA IN EDUCATIONAL RESEARCH
Co-operation between the NSI and NMA in Poland
Presentation transcript:

Health Datasets in Spatial Analyses: The General Overview Lukáš MAREK Department of Geoinformatics, Faculty of Science, Palacky University in Olomouc, Czech Republic

INTRODUCTION Advanced methods for spatial analyses Exploration of spatial pattern Spatial statistics Visualization and presentation for non- geographers (doctors, specialist)

SPATIAL EPIDEMIOLOGY Disease mapping – Visual description of spatial variability of the disease incidence – Maps of incidence risk, identification of areas with high risk Analyses of spatial pattern – Exploration of spatial and spatio-temporal patterns in data – Disease clusters, randomness, … Geographic correlation studies – Analysis of associations among the incidence and environmental factors

HEALTH AND MEDICAL DATA require specific procedures because of their confidentiality – management, presentation and operations aggregated, anonymized or incomplete data sets usage of suitable analytical procedures, while the uncertainty and the inaccuracy of data characteristics need to be taken into account

DATA PROVIDERS International organizations – WHO, EUROSTAT, OECD INSPIRE directive – Theme Human health and safety (Annex III) Institute of Health Information and Statistics of the Czech Republic Czech Statistical Office National Institute of Public Health

DATA TYPES Case-event data – locations of individual cases of a disease, or of individual members of a suitable control group, or covariates. Irregular lattice data – measures aggregated/averaged to the level of census tracts or other type of administrative district. Regular lattice data – measures aggregated/averaged to a regular grid (typically arising from remote sensing). Geostatistical data – measurements sampled at point locations.

DATA PRIVACY Health and medical data = private, confidential and sensitive data Public health reporting systems and medical registries were committed to the protection of the privacy of the individual usefulness of the local scale analysis X privacy protection Availability, accessibility and restrictions

SCALE OF THE DATA Crucial methodological aspect Addresses or coordinates are the most important information for spatial analyses – But privacy can be easily abused Unlikely to explore the relations on the individual level (and not necessary) Mapping to relatively arbitrary administrative areas – Scale sensitive information, MAUP – Different interpretation of findings

ANONYMIZATION 1)spatial and temporal aggregation, 2)adding geographic or etiologic context variables to original unmasked data and then removing the geographic identifiers, 3)random small-scale relocation of individual records, 4)limiting access to potentially identifiable data through a user- and/ or function-restricted computer environment

RECORD BASED ANONYMIZATION Keeping all available records but prevent the re- identification Weak anonymization – Locations are preserved but other properties are limited so the reconstruction of the individual is limited – Rarely used, outputs for the internal purposes Randomization – Case locations are preserved but their true positions are moved in certain distance and/or angle – General picture of the spatial data distribution without allowing the identification of individuals

SCALE BASED ANONYMIZATION Aggregation Most surveillance data are published as summary statistics for administrative level Areal aggregation vs. Point aggregation Matching the level of administrative aggregation with the spatial resolution of data Results obtained from aggregated data should not be used for making assumptions about the nature of an association at the individual level

CASE STUDY Czech Epidemiological Database – EPIDAT – mandatory reporting, recording and analysis of infectious diseases in the Czech Republic Salmonella cases occurrence in the Olomouc Region in 2002 – 2011 Aggregation of records (in space and/or time)

CHOROPLETH MAPS One of the most common type of map Added demographic context and irregular lattice aggregation The data are aggregated to cadastral units and the frequency of the occurrence is re-count to the population Visual tool for the analysis of spatial distribution of phenomenon Relative values

regular hexagonal grid with the area of average cadastral unit two kinds of information – the number of salmonella cases per population is expressed by the size of the hexagon, – population in the unit is expressed by the colour

QUADTREE MAPS Quadtree is a recursive algorithm that partitions an area into four initial quadrants and continues to divide each quadrant into four smaller quadrants in a hierarchical way until relatively homogeneous subareas are obtained Used for the data storage, data aggregation

DOT DENSITY MAPS Usually used for the visualization of any point phenomena Useful for depicting of the spatial pattern and spatial distribution in the case of aggregated data sets Dots pattern creates a better visual depiction of the phenomenon in the space Whether data are combined with the regular or irregular polygon units, the dot density map allows to re- identificate individual cases at least in the certain scale Dots are usually plotted randomly within boundaries of the areal unit.

CONCLUSIONS The statement about the lack of high-quality health and medical data sets is not fully true The question should not be only about the existence of data, but about their availability and the accessibility as well as about restrictions regarding to their usability and the usefulness of outputting results Results obtained from aggregate data should not be used for making assumptions about the nature of an association at the individual level

ACKNOWLEDGEMENT The author gratefully acknowledge the support by the Operational Program Education for Competitiveness - European Social Fund (project CZ.1.07/2.3.00/ of the Ministry of Education, Youth and Sports of the Czech Republic)

THANK YOU FOR YOUR ATTENTION Lukáš MAREK Department of Geoinformatics, Faculty of Science, Palacky University in Olomouc, Czech Republic Health Datasets in Spatial Analyses: The General Overview