Anti-mRNA Strategies

What is the antisense oligonucleotides? - Synthetic genetic material. - Interacts with natural genetic material (DNA or RNA) prevent the production of proteins.

Antisense Oligonucleotides are unmodified or chemically modified ssDNA, RNA or their analogs. They are nucleotides long and are specifically designed to hybridize to the corresponding RNA by Watson-Crick binding

Mechanism of Action of Antisense Oligonucleotides. 1. Translational Arrest by Blocking the Ribosome. animation

The antisense RNA procedure for blocking or reducing the level of expression of a specific gene. Antisense RNA technology

2. Activation of RNase H Mechanism of Action of Antisense Oligonucleotides. The enzyme RNase H is a non- specific endonuclease and catalyzes the cleavage of RNA via a hydrolytic mechanism.

Mechanism of Action of Antisense Oligonucleotides. Ribozymes – Ribozymes are RNA molecules that catalyze biochemical reactions. – Ribozymes cleave single- stranded regions in RNA through transesterification or hydrolysis reactions that result in cleavage of phosphordiester bonds animation

Types of Ribozymes Tetrahymena Group I intron Hammerhead ribozyme Hairpin ribozyme Hepatitis delta virus ribozyme Rnase P

Mechanism of Action of Antisense Oligonucleotides. 1.Ribozyme-coding sequence has been incorporated into plasmids and administered, in effect ribozyme gene therapy. 2.Identification of the minimum ribozyme structure and introduction of chemical modifications that retain ribozyme activity and enhancing stability to nucleases. Hammerhead Ribozymes

1.Single strand of RNA. 2.Three helical stem regions. 3.Unpaired loops at the ends of two helices. 4.Helices radiate out from central unpaired core of nucleotides. 5.Cleavage site is next to a small, unpaired "U-turn" loop. Basic features of Hammerhead ribozyme

1. Accessible sites of the target RNA for oligonucleotide binding have to be identified. 2. Antisense agents have to be protected against nucleolytic attack. 3.Cellular uptake and correct intracellular localization. Limitations of Practical Applications of Antisense Oligonucleotides

Medicinal Chemistry of Antisense Oligonucleotides One of the major challenges for antisense approaches is the stabilization of oligonucleotides, as unmodified oligodeoxynucleotides are rapidly degraded in biological fluids by nucleases.

Application of Antisense Oligonucleotides 1.Functional Genomics and Target Validation: Antisense oligonucleotides can be used to selectively manipulate the expression of chosen gene or genes. The process results in : – A pharmaceutical copmound with a well- understood mechanism of action. – Well characterized distribution and a safe side effect profile which could be used as a human therapeutic.

2.Potential Therapeutic Applications of Antisense Oligonucleotides Application of Antisense Oligonucleotides – A wide variety of potential therapeutic applications of antisense oligonucleotides has been reported in the last few years. – Major areas of these therapeutic applications include: 2.1. Antiviral 2.2. Antibacterial 2.3. CNS Therapeutics: Antisense Oligonucleotides will address unmet medical needs for CNS diseases.

2.Potential Therapeutic Applications of Antisense Oligonucleotides 2.4. Inflammation Therapeutics: e.g. Colitis, Lupus, Lung inflammation, Skin inflammation, Transplantation rejection, Reperfusion injury, Rheumatoid Arthritis and Ocular disease Cardiovascular Therapeutics: e.g. prevention of restenosis, myocardial infarction, rejection in heart transplantation, hypertension and atherosclerosis Regulation of Apoptosis: which will address treatment of cancer, psoriasis,fibrosis, atherosclerosis, restenosis and others

2.7. Anticancer: 2.Potential Therapeutic Applications of Antisense Oligonucleotides 2.8. Other Therapeutic Applications potentials: diabetes, pain and analgesia, psoriasis, myasthenia gravis, hair loss…etc – The most recent antisense application as therapeutic tool is aimed to treat the SARS and bird Flu

Clinical Trials of Antisense Oligonucleotides – One antisense oligonucleotide (fomivirsen) has been approved. – Currently, there are near to 50 antisense compounds in trials for various diseases, up to 10 of which are in phase III, with an additional 20 in Phase II.

– The clinical experience to date should be considered part of the beginning of the story of antisense treatment, with more clinical trials of new antisense drugs soon expected. – Currently over 30 pharmaceutical and biotechnology companies have declared an interest in or have an active drug development program already under way in antisense-based therapeutics –The fuller story, yet to be written, promises to be rich. Future of Antisense-Based Biotechnology The promise of antisense-based biotechnology is therefore stronger than ever.

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