1990-1996 University of Nebraska-Lincoln PhD. in Biochemistry Protein synthesis initiation in eukaryotic system 1997-2001 Vanderbilt University School.

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Presentation transcript:

University of Nebraska-Lincoln PhD. in Biochemistry Protein synthesis initiation in eukaryotic system Vanderbilt University School of Medicine, Nashville Research Fellow Epidermal Growth Factor (EGF) mediated signal transduction Cellomics Inc., Pittsburgh Knowledge Engineer Information Specialist in Molecular Biology and Genetics HSLS, University of Pittsburgh Ansuman Chattopadhyay, Ph.D Present Head, Molecular Biology Information Service HSLS, University of Pittsburgh

Genomic achievements since the Human Genome Project

Progress in Genomics Source: Eric Green; HGP10 Symposium

DNA Sequencing Cost

Big DATA Biology

Growth of PubMed Citations Lu et al. Database (Oxford). 2011: baq K Breast Cancer 104K Schizophrenia 9.9K BRCA1 67K. p53 Aug 20 th

What are Browser Enhancers ? Bookmarklets : bookmarks stored in a web browser that contains JavaScript commands to extend the browser's functionality. a bookmarklet might allow the user to select text on a page, click the bookmarklet, and be presented with a search engine results page for the search term selected. Wikipedia

Example : Library Proxy Server Bookmarklets

Example: Mendeley’s Web Importer

Molecular Biology Information Service License Commercial Software Workshops One-on-one consultations Bioinformatics

Challenges for Biomedical Scientists 5669 Journals 23 million Citations Molecular Databases Microarray NGS Tech GWAS Cancer Genome High Throughput Technologies

Challenges for Biomedical Scientists

how is it calculated ? what is its function ? what is its structure? Challenges for Biomedical Scientists

InfoBoosters

InfoBoosters

Infoboosters

InfoBoosters How is it calculated ? What is its function ? What is its structure?

Data Integration InfoBoosters

Create Your Own InfoBooster

InfoBooster Generator Clinical Trials.gov

InfoBooster Generator Go to the Clinical Trials.gov Website and do a search with a one-word search term, such as asthma 1 1

InfoBooster Generator COPY the URL from the search result page 2 2

InfoBooster Generator

InfoBooster Generator

InfoBooster Generator

InfoBoosters Pros 1.SIMPLE— Easy to use, create, & install 2.UNIVERSAL— Compatible w/most OS & browsers 3.SEAMLESS— Integrates published lit & other databases

Thank you! Any questions? Ansuman Chattopadhyay