Methylmalonyl COA mutase Vitamin B12- Dependent enzymes.

Slides:



Advertisements
Similar presentations
Pathways that Harvest and Store Chemical Energy
Advertisements

Introduction to Cellular Respiration The majority of organisms on earth use glucose as their main energy source. Through a series of redox reactions glucose.
Lecture 31 –Quiz on Wed (today): fatty acid synthesis Final on Monday morning 8-10AM.
12.3 The Citric Acid Cycle Oxidizes AcetylCoA Table 12.2.
Prentice Hall c2002Chapter 71 Chapter 7 - Coenzymes and Vitamins Apoenzyme + Cofactor Holoenzyme (protein only)(active) (inactive) Some enzymes require.
Amino Acid Catabolism: Carbon Skeletons Copyright © by Joyce J. Diwan. All rights reserved. Molecular Biochemistry II.
Catalytic Strategies. Basic Catalytic Principles What is meant by the binding energy as it relates to enzyme substrate interactions? –free energy released.
Cellular Pathways that Harvest Chemical Energy
SEMINARS!!!! Dr. Christopher M. Reddy, Woods Hole Oceanographic Institution. Jean Dreyfus Boissevain Lectureship "Hunting for Subsurface Oil Plumes in.
Average = 76.4 = B- A = 96+ A-=90-95 B+ = B= B- = C+ = C=
The Organic Chemistry of Enzyme-Catalyzed Reactions Chapter 12 Formylations, Hydroxymethylations, and Methylations.
Chapter 5 (part 1) Enzymes: Introduction. Catalyst substance that increase rates of a chemical reaction does not effect equilibrium remain unchanged in.
Figure 24-17Schematic representation of the thylakoid membrane showing the components of its electron-transport chain. Page 886.
1 Oxidation of Fatty Acids. Digestion of Triacylglycerols Beta-Oxidation of Fatty Acids ATP and Fatty Acid Oxidation.
Chapter 7 (part 2) Cofactors. Biotin Water soluble Vitamin Produced by gut microflora which supplies ½ RDA Deficiencies are rare Consuming 6 raw eggs.
Carbon Compounds. What do we know about the structure of Carbon? # of p= e= n= valence electrons= p= n=
The energy in the pyruvate molecules produced in glycolysis can only be released using oxygen in a process called the Krebs Cycle.
Enzymes-cofactors Dr. Mamoun Ahram.
چرخه کربس مرکز سوخت و ساز سلولي مي شناسند، چرا که افزون بر کوشندگي هاي سوخت و سوزي براي کربوهيدراتها، فرآيند سوخت و ساز اسيدهاي چرب و اسيدهاي آمينه.
The Nature of the Active Site Questions we want to ask: 1.Looking at the reactants and products, what type of reaction has occurred Hydrolysis, Condensation,
Introduction Vitamins are an organic chemical compound which the body requires in small amounts for the metabolism and to protect your health. Vitamins.
LEHNINGER PRINCIPLES OF BIOCHEMISTRY Sixth Edition David L. Nelson and Michael M. Cox © 2013 W. H. Freeman and Company CHAPTER 16 The Citric Acid Cycle.
Lecture 32 –Last lecture!! –Fatty acid biosynthesis.
© 2011 Pearson Education, Inc. 1 Organic Chemistry 6 th Edition Paula Yurkanis Bruice Chapter 25 The Organic Chemistry of the Coenzymes, Compounds Derived.
Krebs cycle. Krebs Cycle (Citric acid cycle) Series of 8 sequential reactions Matrix of the mitorchondria Synthesis of 2 ATP Generation of 8 energetic.
Ground Rules of Metabolism Chapter 6. Free Radicals Unbound molecular fragments with the wrong number of electrons Unbound molecular fragments with the.
Enzyme Features Increase rate of reaction Active site binds substrate Unchanged by overall reaction.
Introduction to Enzymes
Cellular Respiration (Chapter 9). Energy Plants, algae & some bacteria Convert radiant energy (sun) into chemical energy (glucose)
The Citric Acid Cycle Chapter 9-3. The Second Phase The Citric Acid cycle is just the second step towards harvesting energy as glycolysis has already.
Harvesting Electrons from the Citric Acid Cycle
Fatty Acid Metabolism. Why are fatty acids important to cells? fuel molecules stored as triacylglycerols building blocks phospholipids glycolipids precursors.
Oxidation and biosynthesis of fatty acids
Fatty acid breakdown The oxidation of fatty acids
The preparatory phase yields 2 molecules of glyceraldehyde 3 phosphate
The Big Picture. The Circle of Life... Photoautotophs: organisms that can build all the organic compounds required for life from simple ________________.
Now let us see what you have learned thus far! Recall cellular respiration is… a series of controlled biochemical reactions involved in the conversion.
CHEE 323J.S. Parent1 Carbenium Ion Reactions: Hydride Abstraction Hydride abstraction is a key intermolecular H (hydride) transfer reaction. It is important.
Coenzymes and cofactors A large number of enzymes require an additional non ‑ protein component to carry out its catalytic functions called as cofactors.
Reminder From glycolysis, 2 ATP net were produced, along with 2 NADH and 2 pyruvate molecules. If oxygen is present, pyruvate will move on with aerobic.
Lecture 11 CATALYSIS I. Hydrogenation and hydroelementation Alkenes Copyright ©The McGraw-Hill Companies, Inc. Permission required for reproduction or.
2. The Citric Acid Cycle (CAC) Pyruvate CO The Citric Acid Cycle (CAC) The sequence of events: Step 1: C-C bond formation to make citrate Step 2:
Beta Oxidation Part II Unsaturated fatty acid Polyunsaturated fatty acid Odd number chain fatty acid Obstacle of cis double bonds Obstacle of position.
3. CITRIC ACID CYCLE. The citric acid cycle (Kreb’s cycle, Tricarboxylic acid cycle) is a series of reactions in mitochondria that bring about the catabolism.
3. VITAMIN B12. The vitamin was isolated from liver after it was found that eating raw liver would alleviate.
Beta-Oxidation of Fatty acids
Chapter 7 Enzyme Mechanisms.
Amino Acid Catabolism: Carbon Skeletons
Volume 95, Issue 12, Pages (December 2008)
RADICAL REACTION Radical reaction is homolytical reaction. When the bonds breaks and the atoms get one bonding electron each, the process is called homolysis.
The Krebs Cycle Biology 11 Advanced
The Study of Chemical Reactions
The Nature of the Active Site
Enzymes Enzymes can speed up a chemical reaction with­out being altered. Enzymes are biological catalysts. Each acts on a specific substance. The specificity.
Watch the link from 4 minutes
Metabolic functions of cyanocobalamin
Cellular Respiration Cellular respiration takes the sugars from food and turns it into ATP. ATP is the energy currency of biological systems, and the energy.
Volume 8, Issue 7, Pages (July 2000)
Enzymes: Introduction
CELLULAR RESPIRATION.
Cellular Respiration Part III:
CELLULAR RESPIRATION.
Conformational changes on substrate binding to methylmalonyl CoA mutase and new insights into the free radical mechanism  Filippo Mancia, Philip R Evans 
Glutamate mutase from Clostridium cochlearium: the structure of a coenzyme B12- dependent enzyme provides new mechanistic insights  R Reitzer, K Gruber,
Volume 4, Issue 3, Pages (March 1996)
Chapter 2 THE CHEMISTRY OF LIFE.
Dr. Mamoun Ahram Nursing First semester, 2017
Learning Objectives Define the following terms: enzyme, chemical reaction, reactant, product, activation energy, catalyst, enzyme-substrate complex. Describe.
Section B: The Process of Cellular Respiration
CLS 431 CLINICAL ENZYMOLOGY May Alrashed. PhD.
Presentation transcript:

Methylmalonyl COA mutase Vitamin B12- Dependent enzymes

Methylmalonyl-CoA Mutase catalyzes a molecular rearrangement in which the branched carbon chain of methylmalonyl- CoA is converted to the linear carbon chain of succinyl-CoA.

Coenzyme B12, a derivative of vitamin B12 (also called cobalamin), is the prosthetic group of Methylmalonyl- CoA Mutase.

Within the Methylmalonyl-CoA Mutase active site, the cobalt atom of coenzyme B12 has two axial ligands: the methyl C atom of 5'-deoxyadenosine (not shown here). an enzyme histidine 610 N

The carboxyl that is in ester linkage to the thiol of coenzyme A is shifted to an adjacent carbon atom, with opposite shift of a hydrogen atom.

The Co atom is coordinated by His 610 in the active site of the enzyme Page 925

AdoCb N-term C-term

L-methylmalonyl-CoA mutase, shifts the bonding of the -CO-CoA from C-2 to C-3, to give succinyl-CoA. This tricky C-C bond rearrangement is atypical in that it involves a radical mechanism.

The radical reaction is induced by the 5- deoxyadenosine cobalmin coenzyme complex (vitamin B12). Cobalt readily transforms between Co(III)- CH2Ado (fully bonded ligand) and Co(II) - -.CH2Ado (loosely complexed radical). The.CH2Ado radical can capture H. from the substrate by 1-electron transfer.

Methylmalonyl-CoA mutase Mechanism begins with homolytic cleavage of the C- Co(III) bond. The AdoCbl is a free radical generator C-Co(III) bond is weak and it is broken and the radical is stabilized favoring the formation of the adenosyl radical. Rearrangement to form succinyl-CoA from a cyclopropyloxy radical Abstraction of a hydrogen atom from 5’deoxyadenosine to regenerate the adenosyl radical Release of succinyl-CoA