Jiten Bhagat University of myExperiment A Social VRE for Research Objects JISC Roadshow | February.

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Presentation transcript:

Jiten Bhagat University of myExperiment A Social VRE for Research Objects JISC Roadshow | February 2010 | Liverpool, UK

Social | Web 2.0 | VRE | Repository... for Research Objects

Research Objects A resource or set of resources that have some kind of scientific intent and purpose

Scientific Workflows as curated Research Objects Collections as curated Research Objects

Scientific Workflows Experimental protocols Automation of data flow Linking up data sets and iteration over large data sets Data gathering and annotation pipelines Data analysis from distributed tools Data mining and knowledge management Hypothesis generation and modelling Literature mining … and so on “Pathways from Diff Expressed Genes” Paul Fisher

Since its public launch in 2007, myExperiment has established the largest collection of scientific workflows publicly available. Over 500 public workflows (900+ total)

Tailored to the needs of Researchers

Making it really easy to... Store | Share | Discover | Curate | Attribute... Research Objects

Build communities | Form relationships

Build packs of related content Share your workflows and files Control access to your workflows and files Find workflows and files that others have shared Maintain and use different versions of workflows Tag and rate workflows and files Write reviews and comments Have discussions and collaborate Create and join groups of similar interests Find people and make friends Send messages to other people on myExperiment Build your profile and reputation Execute workflows directly within myExperiment (if you have access to a remote Taverna enactor) Reuse and repurpose workflows (and other files!)

Emphasis on the special requirements of researchers... Ownership | Credit | Attribution | Licensing | Visibility | Sharing

Collecting together different types of research assets... Workflows | Data | Results | Examples | Provenance | Tags | Documentation | Papers | Websites | Images

Packs

DEMO

Functionality can be accessed through simple RESTful APIs... Wikis | Web apps | Desktop tools | Workbenches | Web services | Google gadgets | Facebook | Mashups | Other interfaces

Google Gadgets

Facebook

Silverlight

Bringing myExperiment to the Taverna user Taverna Plugins

Windows 7

Thank You