Global Alignment: Dynamic Progamming Table s 1 : acagagtaac s 2 : acaagtgatc -acaagtgatc - a c a g a g t a a c j s2s2 i s1s1 Scores: match=1, mismatch=-1,

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Presentation transcript:

Global Alignment: Dynamic Progamming Table s 1 : acagagtaac s 2 : acaagtgatc -acaagtgatc - a c a g a g t a a c j s2s2 i s1s1 Scores: match=1, mismatch=-1, gap=-1

Global Alignment: Dynamic Progamming Table s 1 : acagagtaac s 2 : acaagtgatc -acAagtgatc a c a g a g t a a c j s2s2 i s1s1 Scores: match=1, mismatch=-1, gap=-1

Global Alignment: Dynamic Progamming Table s 1 : acagagtaac s 2 : acaagtgatc -acAagtgatc a c -2 a -3 g -4 a -5 g -6 t -7 a -8 a -9 c -10 j s2s2 i s1s1 Scores: match=1, mismatch=-1, gap=-1

Global Alignment: Dynamic Progamming Table s 1 : acagagtaac s 2 : acaagtgatc -acAagtgatc a c -2 a -3 g -4 a -5 g -6 t -7 a -8 a -9 c -10 j s2s2 i s1s1 Scores: match=1, mismatch=-1, gap=-1

Global Alignment: Dynamic Progamming Table s 1 : acagagtaac s 2 : acaagtgatc -acAagtgatc a c a -3 g -4 a -5 g -6 t -7 a -8 a -9 c -10 j s2s2 i s1s1 Scores: match=1, mismatch=-1, gap=-1

Global Alignment: Dynamic Progamming Table s 1 : acagagtaac s 2 : acaagtgatc -acAagtgatc a c a g a g t a a c j s2s2 i s1s1 Scores: match=1, mismatch=-1, gap=-1 Optimal score

Global Alignment: Dynamic Progamming Table s 1 : acagagtaac s 2 : acaagtgatc -acAagtgatc a c a g a g t a a c j s2s2 i s1s1 Scores: match=1, mismatch=-1, gap=-1 Optimal score

Global Alignment: Dynamic Progamming Table -acAagtgatc a c a g a g t a a c j s2s2 i s1s1 Scores: match=1, mismatch=-1, gap=-1 Optimal score Match or mismatch Insertion Deletion s 1 : acagagtaac s 2 : acaagtgatc