Jonathan R. Potts, Luca Giuggioli, Steve Harris, Bristol Centre for Complexity Sciences & School of Biological Sciences, University of Bristol. 20 September.

Slides:



Advertisements
Similar presentations
From rules to mechanisms: the emergence of animal territoriality Institute for Advanced Studies workshop Complexity and the Real World University of Bristol,
Advertisements

Diffusion of Interacting Particles in One dimension Deepak Kumar School of Physical Sciences Jawaharlal Nehru University New Delhi IITM, Chennai Nov. 9,
Jonathan R. Potts Centre for Mathematical Biology, University of Alberta. 3 December 2012 Territory formation from an individual- based movement-and-interaction.
Using Virtual Laboratories to Teach Mathematical Modeling Glenn Ledder University of Nebraska-Lincoln
Forces B/w Dislocations Consider two parallel (//) edge dislocations lying in the same slip plane. The two dislocations can be of same sign or different.
Lecture 3 Outline: Thurs, Sept 11 Chapters Probability model for 2-group randomized experiment Randomization test p-value Probability model for.
1 Traffic jams (joint work with David Griffeath, Ryan Gantner and related work with Levine, Ziv, Mukamel) To view the embedded objects in this Document,
Uncovering animal movement decisions from positional data Jonathan Potts, Postdoctoral Fellow, University of Alberta, September 2013.
The random walk problem (drunken sailor walk)
Random walk models in biology
1 Predator-Prey Oscillations in Space (again) Sandi Merchant D-dudes meeting November 21, 2005.
Brownian Motion and Diffusion Equations. History of Brownian Motion  Discovered by Robert Brown, 1827  Found that small particles suspended in liquid.
Computational Biology, Part 17 Biochemical Kinetics I Robert F. Murphy Copyright  1996, All rights reserved.
Lattice regularized diffusion Monte Carlo
Continuum Crowds Adrien Treuille, Siggraph 王上文.
1 The Potts model Mike Sinclair. 2 Overview Potts model –Extension of Ising model –Uses interacting spins on a lattice –N-dimensional (spin states > 2)
Continuous Time Monte Carlo and Driven Vortices in a Periodic Potential V. Gotcheva, Yanting Wang, Albert Wang and S. Teitel University of Rochester Lattice.
Stat 1510: Introducing Probability. Agenda 2  The Idea of Probability  Probability Models  Probability Rules  Finite and Discrete Probability Models.
Computational Solid State Physics 計算物性学特論 第8回 8. Many-body effect II: Quantum Monte Carlo method.
Part I: A discrete model of cell-cell adhesion Part II: Partial derivation of continuum equations from the discrete model Part III: A new continuum model.
Stochastic sleep scheduling (SSS) for large scale wireless sensor networks Yaxiong Zhao Jie Wu Computer and Information Sciences Temple University.
General Principle of Monte Carlo Fall 2013 By Yaohang Li, Ph.D.
Molecular Dynamics Simulation Solid-Liquid Phase Diagram of Argon ZCE 111 Computational Physics Semester Project by Gan Sik Hong (105513) Hwang Hsien Shiung.
Modelling animal movement in complex environments Jonathan Potts, University of Leicester, 24 th September 2014.
Ionic Conductors: Characterisation of Defect Structure Lecture 15 Total scattering analysis Dr. I. Abrahams Queen Mary University of London Lectures co-financed.
8. Selected Applications. Applications of Monte Carlo Method Structural and thermodynamic properties of matter [gas, liquid, solid, polymers, (bio)-macro-
Materials Process Design and Control Laboratory MULTISCALE MODELING OF ALLOY SOLIDIFICATION LIJIAN TAN NICHOLAS ZABARAS Date: 24 July 2007 Sibley School.
Narrow escape times in microdomains with a particle-surface affinity and overlap of Brownian trajectories. Mikhail Tamm, Physics Department, Moscow State.
Lecture PowerPoint Slides Basic Practice of Statistics 7 th Edition.
Intrinsic Mean Square Displacements in Proteins Henry R. Glyde Department of Physics and Astronomy University of Delaware, Newark, Delaware JINS-ORNL.
More statistical stuff CS 394C Feb 6, Today Review of material from Jan 31 Calculating pattern probabilities Why maximum parsimony and UPGMA are.
Mathematical Modeling of Signal Transduction Pathways Biplab Bose IIT Guwahati.
Time-dependent Schrodinger Equation Numerical solution of the time-independent equation is straightforward constant energy solutions do not require us.
p = 0.50 Site percolation Square lattice 400 x 400
Percolation Percolation is a purely geometric problem which exhibits a phase transition consider a 2 dimensional lattice where the sites are occupied with.
Two Main Uses of Statistics: 1)Descriptive : To describe or summarize a collection of data points The data set in hand = the population of interest 2)Inferential.
Lecture PowerPoint Slides Basic Practice of Statistics 7 th Edition.
Diffusion in Disordered Media Nicholas Senno PHYS /12/2013.
Physics 361 Principles of Modern Physics Lecture 11.
7.1.1 Hyperbolic Heat Equation
1 On the Levy-walk Nature of Human Mobility Injong Rhee, Minsu Shin and Seongik Hong NC State University Kyunghan Lee and Song Chong KAIST.
Molecular Modelling - Lecture 2 Techniques for Conformational Sampling Uses CHARMM force field Written in C++
Collective diffusion of the interacting surface gas Magdalena Załuska-Kotur Institute of Physics, Polish Academy of Sciences.
KAIS T On the problem of placing Mobility Anchor Points in Wireless Mesh Networks Lei Wu & Bjorn Lanfeldt, Wireless Mesh Community Networks Workshop, 2006.
Pinning of Fermionic Occupation Numbers Christian Schilling ETH Zürich in collaboration with M.Christandl, D.Ebler, D.Gross Phys. Rev. Lett. 110,
CHAPTER 10: Introducing Probability ESSENTIAL STATISTICS Second Edition David S. Moore, William I. Notz, and Michael A. Fligner Lecture Presentation.
Tao Peng and Robert J. Le Roy
Active Walker Model for Bacterial Colonies: Pattern Formation and Growth Competition Shane Stafford Yan Li.
System Dynamics Modeling of Community Sustainability in NetLogo Thomas Bettge TJHSST Computer Systems Lab Senior Research Project
Evolution of Cooperation in Mobile Ad Hoc Networks Jeff Hudack (working with some Italian guy)
6/11/2016Atomic Scale Simulation1 Definition of Simulation What is a simulation? –It has an internal state “S” In classical mechanics, the state = positions.
Lecture 13 Dustin Lueker. 2  Inferential statistical methods provide predictions about characteristics of a population, based on information in a sample.
Computational Physics (Lecture 11) PHY4061. Variation quantum Monte Carlo the approximate solution of the Hamiltonian Time Independent many-body Schrodinger’s.
Pattern Formation via BLAG Mike Parks & Saad Khairallah.
Mean Field Methods for Computer and Communication Systems Jean-Yves Le Boudec EPFL Network Science Workshop Hong Kong July
Continuum Mean-field Equation
DEVELOPMENT OF SEMI-EMPIRICAL ATOMISTIC POTENTIALS MS-MEAM
NEUTRON DIFFUSION THE CONTINUITY EQUATION
Intermittency and clustering in a system of self-driven particles
Estimating Networks With Jumps
Reaction & Diffusion system
8.1 The Binomial Distribution
Apparent Subdiffusion Inherent to Single Particle Tracking
Methods and Materials (cont.)
Thermal Energy & Heat Capacity:
of the IEEE Distributed Coordination Function
Facultés universitaires Notre Dame de la Paix à Namur (FUNDP)
Volume 100, Issue 7, Pages (April 2011)
Brownian Dynamics of Subunit Addition-Loss Kinetics and Thermodynamics in Linear Polymer Self-Assembly  Brian T. Castle, David J. Odde  Biophysical Journal 
Continuum Simulation Monday, 9/30/2002.
Presentation transcript:

Jonathan R. Potts, Luca Giuggioli, Steve Harris, Bristol Centre for Complexity Sciences & School of Biological Sciences, University of Bristol. 20 September 2011 Territorial dynamics

What is “territorial dynamics”? The moving territorial patterns that arise from animal movements and interactions.

Outline What is “territorial dynamics”?

Outline What is “territorial dynamics”? An agent-based model of territory formation in scent-marking animals

Outline What is “territorial dynamics”? An agent-based model of territory formation in scent-marking animals Mathematical analysis of the model

Outline What is “territorial dynamics”? An agent-based model of territory formation in scent-marking animals Mathematical analysis of the model Using data on animal movements to obtain information about scent-mark longevity

The “territorial random walk” model Nearest-neighbour lattice random walkers Deposit scent at each lattice site visited Finite active scent time, T AS An animal’s territory is the set of sites containing its active scent Cannot go into another’s territory Giuggioli L, Potts JR, Harris S (2011) Animal interactions and the emergence of territoriality PLoS Comput Biol 7(3)

Outcomes of the simulations

Territory border MSD scales as Kt/ln(T) where T=4tF and F is the animal’s hopping rate between lattice sites The ratio K/D decays as T AS /T TC increases, where D is the animal’s diffusion constant, T TC =1/4Dρ is the territory coverage time and ρ is the population density

Outcomes of the simulations Territory border MSD scales as Kt/ln(T) where T=4tF and F is the animal’s hopping rate between lattice sites The ratio K/D decays as T AS /T TC increases, where D is the animal’s diffusion constant, T TC =1/4Dρ is the territory coverage time and ρ is the population density 1D simulations show analogous results but the border MSD scales as Kt 1/2

A reduced analytic (1D) model Decouple the animal and border movement (adiabatic approximation) Animal constrained to move within its two adjacent borders Territories are modelled as springs with equilibrium length 1/ρ Borders and animals have an intrinsic random movement

A reduced analytic (1D) model In the simulations, the borders in fact consist of two territory boundaries The boundaries may be separated at any point in time, but they are more likely to move together than separate: p>1/2

Border movement arising from the interaction of boundaries Two mutually exclusive particles on an infinite 1D lattice Perform biased, nearest-neighbour random walk System can be solved exactly 1 When p>1/2, MSD of one particle at long times is Δx(t) 2 = 2a 2 F(1-p) t where a is the lattice spacing and F the hopping rate 1. Potts JR, Harris S and Giuggioli L An anti-symmetric exclusion process for two particles on an infinite 1D lattice arxiv:1107:2020

Animal movement within dynamic territories Use an adiabatic approximation, assuming boundaries move slower than animal: P(L 1,L 2,x,t)≈Q(L 1,L 2,t)W(x,t|L 1,L 2 ) Q(L 1,L 2,t) is boundary probability distribution W(x,t) is the animal probability distribution Giuggioli L, Potts JR, Harris S (2011) Brownian walkers within subdiffusing territorial boundaries Phys Rev E 83,

Animal movement within dynamic territories MSD of the animal is: b(t) controls the MSD of the separation distance between the borders: saturates at long times c(t) controls the MSD of the centroid of the territory: always increasing Other terms ensure =2Dt at short times

Comparison with simulation model Dashed = simulations; solid = analytic model No parameter fitting: values of K and γ measured from simulation Adiabatic approximation works well except when T AS /T TC is low

Obtaining T AS from movement data Radio-tracking data on the urban red fox (Vulpes vulpes) Obtained every 5 minute with 25m square granularity 8000 fixes over 5 years ( ) Gathered in spring and summer so no dispersing/cuckolding

Obtaining T AS from movement data Radio-tracking data on the urban red fox (Vulpes vulpes) Obtained every 5 minute with 25m square granularity 8000 fixes over 5 years ( ) Gathered in spring and summer so no dispersing/cuckolding

Obtaining T AS from movement data Radio-tracking data on the urban red fox (Vulpes vulpes) Obtained every 5 minute with 25m square granularity 8000 fixes over 5 years ( ) Gathered in spring and summer so no dispersing/cuckolding

Obtaining T AS from movement data Run simulations using movement patterns from red fox Obtain a curve relating K to T AS /T TC (right)

Obtaining T AS from movement data Run simulations using movement patterns from red fox Obtain a curve relating K to T AS /T TC (right)

Obtaining T AS from movement data Run simulations using movement patterns from red fox Obtain a curve relating K to T AS /T TC (right) Long-time MSD data gives K-value

Obtaining T AS from movement data Run simulations using movement patterns from red fox Obtain a curve relating K to T AS /T TC (right) Long-time MSD data gives K-value Read off from simulation curve value of T AS /T TC T TC = ρva where v is the animal speed, ρ the population density and a is distance between fixes (25m) Hence calculate T AS ≈ 6.5 days

Conclusions Dynamic territorial patterns emerge from systems of moving, interacting animals

Conclusions Dynamic territorial patterns emerge from systems of moving, interacting animals Reduced, analytically-tractable models help us understand the features that emerge from the system

Conclusions Dynamic territorial patterns emerge from systems of moving, interacting animals Reduced, analytically-tractable models help us understand the features that emerge from the system Such models also allow us to estimate longevity of olfactory cues from animal movement patterns

Conclusions Dynamic territorial patterns emerge from systems of moving, interacting animals Reduced, analytically-tractable models help us understand the features that emerge from the system Such models also allow us to estimate longevity of olfactory cues from animal movement patterns Demonstrated with red fox (Vulpes vulpes) data

Thanks for listening References 1.Giuggioli L, Potts JR, Harris S (2011) Animal interactions and the emergence of territoriality PLoS Comput Biol 7(3) (featured research) 2.Giuggioli L, Potts JR, Harris S (2011) Brownian walkers within subdiffusing territorial boundaries Phys Rev E 83, Potts JR, Harris S and Giuggioli L (in review) An anti-symmetric exclusion process for two particles on an infinite 1D lattice 4. Giuggioli L, Potts JR, Harris S (submitted) Predicting oscillatory dynamics in the movement of territorial animals Working title 1.Potts JR, Harris S and Giuggioli L (in prep) The effect of animal movement and interaction strategies on territorial patterns