The visual system V Neuronal codes in the visual system.

Slides:



Advertisements
Similar presentations
What is the neural code? Puchalla et al., What is the neural code? Encoding: how does a stimulus cause the pattern of responses? what are the responses.
Advertisements

Read this article for Friday next week [1]Chelazzi L, Miller EK, Duncan J, Desimone R. A neural basis for visual search in inferior temporal cortex. Nature.
Driving fast-spiking cells induces gamma rhythm and controls sensory responses Driving fast-spiking cells induces gamma rhythm and controls sensory responses.
Chapter 2.
Biological Modeling of Neural Networks: Week 9 – Coding and Decoding Wulfram Gerstner EPFL, Lausanne, Switzerland 9.1 What is a good neuron model? - Models.
Visual Attention Attention is the ability to select objects of interest from the surrounding environment A reliable measure of attention is eye movement.
Neural Network of the Cerebellum: Temporal Discrimination and the Timing of Responses Michael D. Mauk Dean V. Buonomano.
Read this article for Friday next week [1]Chelazzi L, Miller EK, Duncan J, Desimone R. A neural basis for visual search in inferior temporal cortex. Nature.
Spike Train Statistics Sabri IPM. Review of spike train  Extracting information from spike trains  Noisy environment:  in vitro  in vivo  measurement.
A model for spatio-temporal odor representation in the locust antennal lobe Experimental results (in vivo recordings from locust) Model of the antennal.
Neuronal Coding in the Retina and Fixational Eye Movements Christian Mendl, Tim Gollisch Max Planck Institute of Neurobiology, Junior Research Group Visual.
Synchrony in Neural Systems: a very brief, biased, basic view Tim Lewis UC Davis NIMBIOS Workshop on Synchrony April 11, 2011.
Neurophysics Part 1: Neural encoding and decoding (Ch 1-4) Stimulus to response (1-2) Response to stimulus, information in spikes (3-4) Part 2: Neurons.
Spike timing-dependent plasticity: Rules and use of synaptic adaptation Rudy Guyonneau Rufin van Rullen and Simon J. Thorpe Rétroaction lors de l‘ Intégration.
Impact of Correlated inputs on Spiking Neural Models Baktash Babadi Baktash Babadi School of Cognitive Sciences PM, Tehran, Iran PM, Tehran, Iran.
Introduction: Neurons and the Problem of Neural Coding Laboratory of Computational Neuroscience, LCN, CH 1015 Lausanne Swiss Federal Institute of Technology.
The role of spike blocking as spike-timing-dependent plasticity mechanism Eleftheria Kyriaki Pissadaki Computational Biology Laboratory Institute of Molecular.
Vidna kognicija III Danko Nikolić Teme Neurofiziološki kodovi prijenosa i obrade informacija u vidnom sustavu Dva kôda za percepciju svjetline Problem.
Neural Coding 4: information breakdown. Multi-dimensional codes can be split in different components Information that the dimension of the code will convey.
Biological Modeling of Neural Networks: Week 11 – Continuum models: Cortical fields and perception Wulfram Gerstner EPFL, Lausanne, Switzerland 11.1 Transients.
The visual system II Eye and retina. The primary visual pathway From perret-optic.ch.
Use a pen on the test. The distinct modes of vision offered by feedforward and recurrent processing Victor A.F. Lamme and Pieter R. Roelfsema.
Writing Workshop Find the relevant literature –Use the review journals as a first approach e.g. Nature Reviews Neuroscience Trends in Neuroscience Trends.
CSE 153 Cognitive ModelingChapter 3 Representations and Network computations In this chapter, we cover: –A bit about cortical architecture –Possible representational.
Read this article for Friday [1]Chelazzi L, Miller EK, Duncan J, Desimone R. A neural basis for visual search in inferior temporal cortex. Nature 1993;
Reinagel lectures 2006 Take home message about LGN 1. Lateral geniculate nucleus transmits information from retina to cortex 2. It is not known what computation.
Overview of Neuroscience Tony Bell Helen Wills Neuroscience Institute University of California at Berkeley.
The Human Visual System Short Overview. Terms: LGN, cortex, primary visual cortex, V1.
Feedforward networks. Complex Network Simpler (but still complicated) Network.
Levels in Computational Neuroscience Reasonably good understanding (for our purposes!) Poor understanding Poorer understanding Very poorer understanding.
SME Review - September 20, 2006 Neural Network Modeling Jean Carlson, Ted Brookings.
Components of the visual system. The individual neuron.
Laurent Itti: CS599 – Computational Architectures in Biological Vision, USC Lecture 7: Coding and Representation 1 Computational Architectures in.
Connected Populations: oscillations, competition and spatial continuum (field equations) Lecture 12 Course: Neural Networks and Biological Modeling Wulfram.
Biological Modeling of Neural Networks: Week 15 – Population Dynamics: The Integral –Equation Approach Wulfram Gerstner EPFL, Lausanne, Switzerland 15.1.
Mechanisms for phase shifting in cortical networks and their role in communication through coherence Paul H.Tiesinga and Terrence J. Sejnowski.
Neuronal Coding in the Retina and Fixational Eye Movements Friday Seminar Talk November 6, 2009 Friday Seminar Talk November 6, 2009 Christian Mendl Tim.
1 Computational Vision CSCI 363, Fall 2012 Lecture 3 Neurons Central Visual Pathways See Reading Assignment on "Assignments page"
Lecture 11: Networks II: conductance-based synapses, visual cortical hypercolumn model References: Hertz, Lerchner, Ahmadi, q-bio.NC/ [Erice lectures]
Biomedical Sciences BI20B2 Sensory Systems Human Physiology - The basis of medicine Pocock & Richards,Chapter 8 Human Physiology - An integrated approach.
fMRI Methods Lecture 12 – Adaptation & classification
Chapter 7. Network models Firing rate model for neuron as a simplification for network analysis Neural coordinate transformation as an example of feed-forward.
Chapter 3: Neural Processing and Perception. Neural Processing and Perception Neural processing is the interaction of signals in many neurons.
Biological Modeling of Neural Networks: Week 12 – Decision models: Competitive dynamics Wulfram Gerstner EPFL, Lausanne, Switzerland 12.1 Review: Population.
The Function of Synchrony Marieke Rohde Reading Group DyStURB (Dynamical Structures to Understand Real Brains)
Neural Networks with Short-Term Synaptic Dynamics (Leiden, May ) Misha Tsodyks, Weizmann Institute Mathematical Models of Short-Term Synaptic plasticity.
Synchronous activity within and between areas V4 and FEF in attention Steve Gotts Laboratory of Brain and Cognition NIMH, NIH with: Georgia Gregoriou,
Chapter 2. From Complex Networks to Intelligent Systems in Creating Brain-like Systems, Sendhoff et al. Course: Robots Learning from Humans Baek, Da Som.
Interneuron diversity and the cortical circuit for attention
Activity Dependent Conductances: An “Emergent” Separation of Time-Scales David McLaughlin Courant Institute & Center for Neural Science New York University.
Structure and functions of cells of the nervous system Chapter 2.
Spatial Organization of Neuronal Population Responses in Layer 2/3 of Rat Barrel Cortex Jason N. D. Kerr, Christiaan P. J. de Kock, David S. Greenberg,
Ch 9. Rhythms and Synchrony 9.7 Adaptive Cooperative Systems, Martin Beckerman, Summarized by M.-O. Heo Biointelligence Laboratory, Seoul National.
Biological Modeling of Neural Networks: Week 15 – Fast Transients and Rate models Wulfram Gerstner EPFL, Lausanne, Switzerland 15.1 Review Populations.
Two Mean Neuronal Waveforms Distribution of Spike Widths Interaction of Inhibitory and Excitatory Neurons During Visual Stimulation David Maher Department.
2nd TAC Meeting Christian B. Mendl Tim Gollisch Lab Neuronal Coding in the Retina and Fixational Eye Movements Neuronal Coding in the Retina and Fixational.
Nens220, Lecture 11 Introduction to Realistic Neuronal Networks John Huguenard.
Biological Modeling of Neural Networks: Week 10 – Neuronal Populations Wulfram Gerstner EPFL, Lausanne, Switzerland 10.1 Cortical Populations - columns.
Ch. 13 A face in the crowd: which groups of neurons process face stimuli, and how do they interact? KARI L. HOFFMANN 2009/1/13 BI, Population Coding Seminar.
The Neural Code Baktash Babadi SCS, IPM Fall 2004.
Yu Kai 2010/09/27 Journal Club 1. Introduction In sensory cortical areas, neurons are turned to specific stimulus features. In the present paper, the.
Motor cortex Organization of motor cortex Motor cortical map
Volume 97, Issue 6, Pages e5 (March 2018)
Predicting Every Spike
Adaptation without Plasticity
Neuromodulation of Brain States
Adaptation without Plasticity
Volume 61, Issue 2, Pages (January 2009)
Rapid Neocortical Dynamics: Cellular and Network Mechanisms
Volume 27, Issue 13, Pages e3 (June 2019)
Presentation transcript:

The visual system V Neuronal codes in the visual system

time What‘s the code? Firing rateSpike timing - Synchrony - Timing patterns

’Firing rates are the only code that ALWAYS works’ The codes – firing rate

We start with the question Does the brain use rate or precise timing? We turn that into: How noisy are networks? The codes – firing rate Latham & London (submitted)

Identical input on every trial t=0 The codes – firing rate Latham & London (submitted)

large noise one extra spike on trial 2 small noise t=0 Identical input on every trial Latham & London (submitted)

We start with the question Does the brain use rate or precise timing? We turn that into: How noisy are networks? And finally: How many extra postsynaptic spikes are caused by one extra presynaptic spike? The codes – firing rate Latham & London (submitted)

Experimental details: in vivo whole cell recordings layer 5 pyramidal cells of rat barrel cortex urethane anesthetic with and without whisker stimulation current injection rather than PSPs Latham & London (submitted)

V 100 ms θ Latham & London (submitted)

V 100 ms θ extra spike Latham & London (submitted)

V 100 ms θ small effect Latham & London (submitted)

V 100 ms θ Latham & London (submitted) small effect

V 100 ms θ Latham & London (submitted) big effect!!!

number of extra spikes caused by just one extra spike =p 1 × number of connections per neuron ≈p 1 × 1000 ≈0.025 × 1000 = 25 Latham & London (submitted)

large noise one extra spike on trial 2 small noise t=0 Identical input on every trial Latham & London (submitted)

Manipulation of firing rates influences visual perception Salzman et al., (1992)

Manipulation of firing rates influences visual perception Salzman et al., (1992)

The codes – synchrony ’Perception is about association. Synchrony is too.’

The codes – synchrony

Center-surround interactions Biederlack et al. (2006)

Center-surround interactions Biederlack et al. (2006)

The escape of the bullfrog Ishikane et al. (2005)

The escape of the bullfrog Ishikane et al. (2005)

The codes – precise timing ’If it works, precise timing has incredible coding capacity’

20 ms per stage! 1 spike per neuron! Thorpe & Fabre-Thorpe (2001) The codes – precise timing ms ms ms ms ms ms

What can one spike tell us?

Theories on spike timing in the cortex Van Rullen & Thorpe (2001)

Onset latencies in vision Gollisch & Meister (2008) Fast OFF cell Biphasic OFF cell Time[ms] Time[ms]

Onset latencies in vision Gollisch & Meister (2008)

From external to internal timing

Experimental setup Anaesthesia Primary visual cortex Grating stimuli 16 channels per recording probe Multi- and single unit activity 0.2 mm

Raw data Time [ms] Neuron #

Raw data Time [ms] Neuron #

Raw data Time [ms] Neuron #

Raw data Time [ms] Neuron #

Preferred firing sequences Preferred relative firing time [ms]

Stimulus-dependent changes Relative firing time [ms]

Stability Relative firing time [ms] 7 hours

Firing sequences and firing rates r total = 0.28 r 2 total = 0.08 Firing rate Firing time

Firing sequences and firing rates Time [sec] # of action potentials Relative firing time [ms] Time [sec] r total = 0.01 r 2 total = 0.00

Neuronal coding in the real world – what is a response?

Responses are multi-dimensional Basole et al. (2003)

Information from ‘non-responsive‘ areas Haxby et al. (2001)

Natural vision is dynamic Things move. The body moves. Your eyes move. Everything moves. Vision is made to be a dynamic process.

´Lab´ activation Mainen & Sejnowski (1995)

´Natural´ activation Mainen & Sejnowski (1995)

Retinal responses to dynamic stimuli Meister & Berry (1999)

The fly in the woods Lewen et al. (2001)

The fly in the woods Lewen et al. (2001) Time (sec)

Sparse responses in natural vision What‘s the code?!

Neuronal coding in the real world – what is a signal?

Strength and structure of inputs complement each other Synaptic efficacy is boosted by bursting of a single neuron and synchrony of several neurons (Usrey et al.,1998, 2000; Swadlow & Gusev, 2001) Integration time of retinal and LGN cells changes from 1 ms to 100 ms depending on visual circumstances (Berry & Meister 1999, Butts & Stanley, 2007)

Rall (1964) Strength and structure of inputs complement each other

Rall (1964) Strength and structure of inputs complement each other

Rall (1964) Strength and structure of inputs complement each other

Rall (1964) Strength and structure of inputs complement each other

Rall (1964) Strength and structure of inputs complement each other

Rall (1964) Strength and structure of inputs complement each other

Rall (1964) Strength and structure of inputs complement each other

Euler & Denk (2004) Stiefel & Sejnowski (2007) Strength and structure of inputs complement each other

Inputs modulate both rate and timing Kuffler (1953) Increase in stimulus intensity Stimulus onset 50 ms

Inputs modulate both rate and timing Fries et al. (2007) Input

Inputs modulate both rate and timing Lengyel et al. (2005)Stiefel et al. (2005)

Summary V – Neuronal codes in the visual system… are often brought into conceptual competition although in every day vision, they coexist naturally can rarely be tested directly to find out whether they are crucial for perception are diverse and have all proven successful in different visual tasks and circumstances

The code is… Everything.