DNA Identification: TrueAllele ® Testimony Cybergenetics © 2003-2010 Continuing Legal Education Duquesne University October, 2010 Mark W Perlin, PhD, MD,

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Presentation transcript:

DNA Identification: TrueAllele ® Testimony Cybergenetics © Continuing Legal Education Duquesne University October, 2010 Mark W Perlin, PhD, MD, PhD Cybergenetics, Pittsburgh, PA

Interpretion: Same Principle DNA data A. Infer genotype 1.Data 2.Model 3.Compare 4.Probability B. Match genotype Likelihood ratio

Different Methods

Frye: General Acceptance in the Relevant Community Quantitative STR Peak Information Genotype Probability Distributions Computer Interpretation of STR Data Statistical Modeling and Computation Likelihood Ratio Literature Mixture Interpretation Admissibility Computer Systems for Quantitative DNA Mixture Deconvolution TrueAllele Casework Publications

Validating Mixture Methods Match Score = Information efficacy reproducibility Ranking: 1 Addition 2 Subtraction 3 Inclusion Perlin MW. Scientific validation of mixture interpretation methods. Promega's Seventeenth International Symposium on Human Identification, Nashville, TN

Validation Study

Expected Result 15 loci 12 loci 67

Addition vs. Inclusion

Threshold: all or none

Continuous: shades of gray

Statistical Inference View inclusion vs. likelihood ratio "often robs the items of any probative value" - B. Weir "usually discards a lot of information compared to the correct likelihood ratio approach" - C. Brenner "does not use as much of the information included in the data as the LR approach but, conceptually, they are equivalent" - M. Krawczak "Recommendation 1: The likelihood ratio is the preferred approach to mixture interpretation." - DNA commission of the International Society of Forensic Genetics

Relevant Scientific Community The forensic scientists who largely focus on DNA inference and statistics. Develop, discuss, publish, validate & assess DNA interpretation methods. Implement methods in computer software. Provide a pallet of interpretation methods for the practitioner to choose from. Lay the scientific foundation for practitioners. Give expert backup in court testimony.

Pennsylvania State Police Christine S. Tomsey, et al Forensic DNA Laboratory Croatian Medical Journal, 2001 Mixtures with a known contributor genetic profile of the unknown can be inferred subtracting the contribution of the known donor peak height ratios can be used

Interpretation Differs National Institute of Standards and Technology Two Contributor Mixture Data, Known Victim 31 thousand (4) 213 trillion (14)

Other Methods are Similar James Curran. "A MCMC method for resolving two person mixtures." Science & Justice. 2008;48(4):

TrueAllele Users Allegheny County Crime Lab (Forensic Identification) Armed Forces DNA Identification Laboratory (Forensic Identification) DeCode Genetics, Iceland (Genetic Discovery) Forensic Science Service, UK (Forensic Identification) Maryland State Police (Forensic Identification) Marshall University, WV (Forensic Research) Massachusetts State Police (Forensic Identification) National Institutes of Health (Genetic Discovery) New York City OCME (Mass Disaster Forensic Identification) New York State Police (Forensic Identification) Orchid Cellmark - Abingdon, UK (Forensic Identification) Orchid Cellmark - Nashville, USA (Forensic Identification) Puerto Rico Forensic Science Center (Forensic Identification) SmithKline Beecham Pharmaceuticals, UK (Genetic Discovery) University of Pittsburgh (Genetic Counseling, Genetic Discovery)

Other Mixture Systems GeneMapper ® ID-X (Applied Biosystems, California) FSS I-3 ® I-STReam (Forensic Science Service, United Kingdom) TrueAllele ® Casework System (Cybergenetics, Pennsylvania) Least Square Deconvolution (University of Tennessee) MAIES (Universities of Oxford and Rome, Cass Business School, London) MCMC-Pendulum (University of Auckland, New Zealand)

Inclusion DNA Match 13 thousand (4)

Subtraction DNA Match 13 thousand (4) 23 million (7)

Addition DNA Match 13 thousand (4) 23 million (7) 189 billion (11)

Perfect DNA Match 13 thousand (4) 23 million (7) 189 billion (11) 875 trillion (14)

Cross Examination How can reliable DNA give different statistics? Why doesn't the computer use thresholds? Has this method ever been used before in court?

TrueAllele Admitted

Trial Testimony one principle: infer genotype, then match methods make different use of the data better data use gives more information MIX05: huge variation in interpretation validation study predicts match result

Trial Cross Examination Why are there different statistics? how method uses data, ethnic population, … Shouldn't the same data give the same answer? microscope analogy for examining same slide Don't computers need thresholds? that is a human limitation, and is not relevant

The Verdict "John Yelenic provided the most eloquent and poignant evidence in this case," said the prosecutor, senior deputy attorney general Anthony Krastek. "He managed to reach out and scratch his assailant," capturing the murderer's DNA under his fingernails.