Combination of pulsed-field gel electrophoresis (PFGE) and single-enzyme amplified fragment length polymorphism (SAFLP) for differentiation of multiresistant.

Slides:



Advertisements
Similar presentations
J. Engberg, D. D. Bang, R. Aabenhus, F. M. Aarestrup, V. Fussing, P
Advertisements

Characteristics of Clostridium difficile strains isolated from asymptomatic individuals and from diarrheal patients  S. Wongwanich, P. Pongpech, C. Dhiraputra,
Molecular characterization of methicillin-resistant Staphylococcus epidermidis strains from bacteraemic patients  S. Ibrahem, S. Salmenlinna, O. Lyytikäinen,
Clearance of a fluconazole-resistant Candida albicans strain after switching antifungal therapy and initiation of triple therapy for HIV infection  M.
Detection of fungal DNA in lysis–centrifugation blood culture for the diagnosis of invasive candidiasis in neonatal patients  L. Trovato, P. Betta, M.G.
S. Le Hello, V Falcot, F Lacassin, F Baumann, P Nordmann, T Naas 
Activity of quinupristin–dalfopristin in invasive isolates of Streptococcus pneumoniae from Italy  A. Pantosti, F. D'Ambrosio, E. Bordi, A. Scotto d'Abusco,
A. N. Maniatis, S. Pournaras, S. Orkopoulou, P. T. Tassios, N. J
Correlation between the activity of different fluoroquinolones and the presence of mechanisms of quinolone resistance in epidemiologically related and.
Pulsed-field gel electrophoresis (PFGE) pattern of genomic DNA of penicillin-resistant pneumococci in Korea, where the resistance rate is very high  Yunsop.
G. L. Daikos, P. Triantafyllopoulou, V. Syriopoulou, D
K. Diestra, E. Miró, C. Martí, D. Navarro, J. Cuquet, P. Coll, F
Prevalence of diarrheagenic Escherichia coli strains detected by PCR in patients with travelers' diarrhea  M. Vargas, J. Gascón, F. Gallardo, M. T. Jimenez.
Evidence of transmission of verocytotoxin-producing Escherichia coli O111 from a cattle stable to a child  E. Møller Nielsen, C. Jensen, D. Lau Baggesen 
Sporadic occurrence of CMY-2-producing multidrug-resistant Escherichia coli of ST- complexes 38 and 448, and ST131 in Norway  U. Naseer, B. Haldorsen,
Integron-mediated antibiotic multiresistance in Acinetobacter baumannii clinical isolates from Spain  J. Ruiz, M.M. Navia, C. Casals, J.M. Sierra, M.T.
A PCR-based method to differentiate between Acinetobacter baumannii and Acinetobacter genomic species 13TU  P.G. Higgins, H. Wisplinghoff, O. Krut, H.
Problems in diagnosis and treatment of Staphylococcus haemolyticus endocarditis in a hemodialysis patient  Henk Louagie, Marc Struelens, Raf De Ryck,
Comparison of multiple typing methods for Aspergillus fumigatus
D.S. Hansen, R. Skov, J.V. Benedí, V. Sperling, H.J. Kolmos 
Phenotypic and molecular characterization of multidrug-resistant Salmonella enterica serovar Hadar in Greece, from 2007 to 2010  T. Papadopoulos, E. Petridou,
Rhodococcus equi pneumonia in a heart transplant recipient in Korea, with emphasis on microbial diagnosis  S.J. Yoo, H. Sung, J.D. Chae, M. -N. Kim, C.H.
Pulsed-field gel electrophoresis (PFGE) pattern of genomic DNA of penicillin-resistant pneumococci in Korea, where the resistance rate is very high  Yunsop.
Odile Launay, Jean-Claude Nguyen Van, Annie Buu-Hoï, J.F. Acar 
Isolation and characterisation of toxin A-negative, toxin B-positive Clostridium difficile in Dublin, Ireland  D. Drudy, N. Harnedy, S. Fanning, R. O'Mahony,
PCR-based DNA fingerprinting (REP-PCR, AP-PCR) and pulsed-field gel electrophoresis characterization of a nosocomial outbreak caused by imipenem- and.
Emergence of resistance to fluoroquinolones and third-generation cephalosporins in Shigella flexneri subserotype 1c isolates from China  S. Qiu, X. Xu,
PCR ribotyping and arbitrarily primed PCR for the comparison of enterotoxigenic Bacteroides fragilis strains from two Polish university hospitals  Gayane.
Breast milk causing neonatal sepsis and death
S. Hosoglu, M. Loeb, M.F. Geyik, H. Ucmak, P. Jayaratne 
C. Peña, M.A. Dominguez, M. Pujol, R. Verdaguer, F. Gudiol, J. Ariza 
Use of sequence-based typing and multiplex PCR to identify clonal lineages of outbreak strains of Acinetobacter baumannii  J.F. Turton, S.N. Gabriel,
A new multiplex PCR for easy screening of methicillin-resistant Staphylococcus aureus SCCmec types I–V  K. Boye, M.D. Bartels, I.S. Andersen, J.A. Møller,
Dissemination of multidrug-resistant, class 1 integron-carrying Acinetobacter baumannii isolates in Taiwan  L.-Y. Huang, T.-L. Chen, P.-L. Lu, C.-A. Tsai,
Prevalence of the sat, set and sen genes among diverse serotypes of Shigella flexneri strains isolated from patients with acute diarrhoea  S.K. Niyogi,
Michael W. Carter, Timothy G. Harrison, M. Shuja Shafi, Robert C
Clearance of a fluconazole-resistant Candida albicans strain after switching antifungal therapy and initiation of triple therapy for HIV infection  M.
Phenotypic and genotypic characterization of Neisseria gonorrhoeae in parts of Italy: detection of a multiresistant cluster circulating in a heterosexual.
Rapid identification of uropathogenic Escherichia coli of the O25:H4-ST131 clonal lineage using the Diversi-Lab repetitive sequence-based PCR system 
Ciprofloxacin-resistant, CTX-M-15-producing Escherichia coli ST131 clone in extraintestinal infections in Italy  M. Cerquetti, M. Giufrè, A. García-Fernández,
Failure of bacteriophage typing to detect an inter-hospital outbreak of methicillin- resistant Staphylococcus aureus (MRSA) in Zagreb subsequently identified.
An outbreak of skin and soft tissue infection caused by Mycobacterium abscessus following acupuncture  S.-J. Koh, T. Song, Y.A. Kang, J.W. Choi, K.J.
Unclassified serovars of Chlamydia trachomatis isolated from Japanese infants  Kei Numazaki, Masami Ikehata, Shunzo Chiba, Katsuya Suzuki, Nobuo Hashimoto 
C. Silva-Costa, F.R. Pinto, M. Ramirez, J. Melo-Cristino 
Characterisation of non-multiresistant methicillin-resistant Staphylococcus aureus (including EMRSA-15) in Kuwait Hospitals  E.E. Udo, N. Al-Sweih, B.
Close genetic relationship between Salmonella enterica serovar Enteritidis isolated from patients with diarrhoea and poultry in the Republic of Korea 
Nationwide pseudo-outbreak of Salmonella enterica ssp
Fluorescent amplified fragment length polymorphism genotyping of Salmonella Enteritidis: a method suitable for rapid outbreak recognition  F. Scott, J.
Nosocomial listeria gastroenteritis in a newborn, confirmed by random amplification of polymorphic DNA  H. Hof, R. Lampidis, J. Bensch  Clinical Microbiology.
A. Gelosia, L. Baldassarri, M. Deighton, T. van Nguyen 
G. Kouppari, M. Biendo, G. Laurans, D. Thomas, O. Dechepy, F
Identification of widespread, closely related Acinetobacter baumannii isolates in Portugal as a subgroup of European clone II  G. Da Silva, L. Dijkshoorn,
Colonization of residents and staff of a long-term-care facility and adjacent acute-care hospital geriatric unit by multiresistant bacteria  A. March,
Endemic meningococcal disease in Cerdanyola, Spain, 1987–93: molecular epidemiology of the isolates of Neisseria meningitidis  M. Esther Verdú, Pere Coll,
Molecular characterisation of a dominant methicillin-resistant Staphylococcus aureus (MRSA) clone in a Mexican hospital (1999–2003)  G. Echániz-Aviles,
S.B. Schwartz, K.A. Thurman, S.L. Mitchell, B.J. Wolff, J.M. Winchell 
Genetic relatedness between group B streptococci originating from bovine mastitis and a human group B streptococcus type V cluster displaying an identical.
L. R. Ásmundsdóttir, H. Erlendsdóttir, A. L. Gísladóttir, M
Amplified fragment length polymorphism genotyping of metronidazole-resistant Helicobacter pylori infecting dyspeptics in England  R.J. Owen, M. Ferrus,
S. Alexiou-Daniel, A. Stylianakis, A. Papoutsi, I. Zorbas, A. Papa, A
Comparison of one-tube multiplex PCR, automated ribotyping and intergenic spacer (ITS) sequencing for rapid identification of Acinetobacter baumannii 
Comparison of macrorestriction analysis of genomic DNA by pulsed-field gel electrophoresis and ribotyping with conventional methods for differentiation.
Clonal dissemination of two clusters of Acinetobacter baumannii producing OXA-23 or OXA-58 in Rome, Italy  R.E. Mendes, T. Spanu, L. Deshpande, M. Castanheira,
P. Mastrantonio, P. Stefanelli, F. Conti, R. Cardines, T. Sofia, S
Molecular characterisation of an outbreak strain of multiresistant Salmonella enterica serovar Typhimurium DT104 in the UK  A.J. Lawson, M. Desai, S.J.
F. B. Spencker, S. Haupt, M. C. Claros, S. Walter, T. Lietz, R
Typing of Clostridium difficile
A family outbreak due to an emm-type 11 multiresistant strain of Streptococcus pyogenes  C. Martinaud, A. Doloy, B. Graffin, T. Gaillard, R. Poyet, S.
P. D. Crook, J. F. Aguilera, E. J. Threlfall, S. J. O'Brien, G
Genetic diversity of community-associated methicillin-resistant Staphylococcus aureus in southern Stockholm,   H. Fang, G. Hedin, G. Li, C.E.
Presentation transcript:

Combination of pulsed-field gel electrophoresis (PFGE) and single-enzyme amplified fragment length polymorphism (SAFLP) for differentiation of multiresistant Salmonella enterica serotype typhimurium  S. Sood, T. Peters, L.R. Ward, E.J. Threlfall  Clinical Microbiology and Infection  Volume 8, Issue 3, Pages 154-161 (March 2002) DOI: 10.1046/j.1469-0691.2002.00390.x Copyright © 2002 European Society of Clinical Infectious Diseases Terms and Conditions

Figure 1 (a) PFGE analysis of S. Typhimurium. Lanes 1 and 20: PFGE low-range DNA ladder (New England BioLabs, Hitchin, UK). Lane 2: P5075600. Lane 3: P5075610. Lane 4: P5075620. Lane 5: P5075640. Lane 6: P5075650. Lane 7: P5075660. Lane 8: P5075671. Lane 9: P5075681. Lane 10: P5075691. Lane 11: P5075701. Lane 12: P5075710. Lane 13: P5075720. Lane 14: P5075730. Lane 15: P5075740. Lane 16: P5075750. Lane 17: P50757761. Lane 18: P5075770. Lane 19: P5075780. (b) Dendrogram of the MR S. Typhimurium pulsed-field profiles. From the pulsed-field patterns, genetic similarity was calculated by the Dice coefficient and clustered by an unweighted pair-group arithmetic averaging method. 1, P5075600; 2, P5075610; 3, P5075620; 4, P5075640; 5, P5075650; 6, P5075660; 7, P5075671; 8, P5075681; 9, P5075691; 10, P5075701; 11, P5075710; 12, P5075720; 13, P5075730; 14, P5075740; 15, P5075750; 16, P50757761; 17, P5075770; 18, P5075780. Clinical Microbiology and Infection 2002 8, 154-161DOI: (10.1046/j.1469-0691.2002.00390.x) Copyright © 2002 European Society of Clinical Infectious Diseases Terms and Conditions

Figure 2 SAFLP analysis of MR S. Typhimurium strains using primer HI-C. (a) Lanes 1 and 12: 123-bp molecular weight marker. Lane 2: P5075600. Lane 3: P5075610. Lane 4: P5075620. Lane 5: P5075640. Lane 6: P5075650. Lane 7: P5075660. Lane 8: P5075671. Lane 9: P5075681. Lane 10: P5075691. Lane 11: PCR-negative control. (b) Lanes 1 and 12: 123-bp molecular weight marker. Lane 2: P5075701. Lane 3: P5075710. Lane 4: P5075720. Lane 5: P5075730. Lane 6: P5075740. Lane 7: P5075750. Lane 8: P5075761. Lane 9: P5075770. Lane 10: P5075780. Lane 11: PCR-negative control. Clinical Microbiology and Infection 2002 8, 154-161DOI: (10.1046/j.1469-0691.2002.00390.x) Copyright © 2002 European Society of Clinical Infectious Diseases Terms and Conditions