Wellcome Dept. of Imaging Neuroscience University College London

Slides:



Advertisements
Similar presentations
Group analyses Wellcome Dept. of Imaging Neuroscience University College London Will Penny.
Advertisements

Hierarchical Models and
Camilla Clark, Catherine Slattery
Group analysis Kherif Ferath Wellcome Trust Centre for Neuroimaging University College London SPM Course London, Oct 2010.
Group analyses of fMRI data Methods & models for fMRI data analysis in neuroeconomics November 2010 Klaas Enno Stephan Laboratory for Social and Neural.
Group analyses Wellcome Dept. of Imaging Neuroscience University College London Will Penny.
The General Linear Model (GLM)
Group analyses of fMRI data Methods & models for fMRI data analysis 28 April 2009 Klaas Enno Stephan Laboratory for Social and Neural Systems Research.
Group analyses of fMRI data Methods & models for fMRI data analysis 26 November 2008 Klaas Enno Stephan Laboratory for Social and Neural Systems Research.
1st Level Analysis Design Matrix, Contrasts & Inference
General Linear Model & Classical Inference Guillaume Flandin Wellcome Trust Centre for Neuroimaging University College London SPM M/EEGCourse London, May.
2nd Level Analysis Jennifer Marchant & Tessa Dekker
7/16/2014Wednesday Yingying Wang
SPM Course Zurich, February 2015 Group Analyses Guillaume Flandin Wellcome Trust Centre for Neuroimaging University College London With many thanks to.
Corinne Introduction/Overview & Examples (behavioral) Giorgia functional Brain Imaging Examples, Fixed Effects Analysis vs. Random Effects Analysis Models.
Group analyses of fMRI data Methods & models for fMRI data analysis November 2012 With many thanks for slides & images to: FIL Methods group, particularly.
Contrasts & Inference - EEG & MEG Himn Sabir 1. Topics 1 st level analysis 2 nd level analysis Space-Time SPMs Time-frequency analysis Conclusion 2.
Bayesian Inference and Posterior Probability Maps Guillaume Flandin Wellcome Department of Imaging Neuroscience, University College London, UK SPM Course,
Wellcome Dept. of Imaging Neuroscience University College London
Methods for Dummies Second level Analysis (for fMRI) Chris Hardy, Alex Fellows Expert: Guillaume Flandin.
FMRI Modelling & Statistical Inference Guillaume Flandin Wellcome Trust Centre for Neuroimaging University College London SPM Course Chicago, Oct.
Idiot's guide to... General Linear Model & fMRI Elliot Freeman, ICN. fMRI model, Linear Time Series, Design Matrices, Parameter estimation,
The General Linear Model
The General Linear Model Guillaume Flandin Wellcome Trust Centre for Neuroimaging University College London SPM fMRI Course London, May 2012.
Group Analysis ‘Ōiwi Parker Jones SPM Course, London May 2015.
Variance components Wellcome Dept. of Imaging Neuroscience Institute of Neurology, UCL, London Stefan Kiebel.
Bayesian Inference in SPM2 Will Penny K. Friston, J. Ashburner, J.-B. Poline, R. Henson, S. Kiebel, D. Glaser Wellcome Department of Imaging Neuroscience,
The General Linear Model Christophe Phillips SPM Short Course London, May 2013.
The General Linear Model Guillaume Flandin Wellcome Trust Centre for Neuroimaging University College London SPM fMRI Course London, October 2012.
The General Linear Model (GLM)
Group Analyses Guillaume Flandin SPM Course London, October 2016
The General Linear Model (GLM)
The general linear model and Statistical Parametric Mapping
The General Linear Model
2nd Level Analysis Methods for Dummies 2010/11 - 2nd Feb 2011
Wellcome Trust Centre for Neuroimaging University College London
A very dumb dummy thinks about modelling, contrasts, and basis functions. ?
Random Effects Analysis
Group analyses Thanks to Will Penny for slides and content
Wellcome Trust Centre for Neuroimaging University College London
Keith Worsley Keith Worsley
The General Linear Model (GLM)
Spatio-Temporal Clustering
Contrasts & Statistical Inference
'Linear Hierarchical Models'
Wellcome Dept. of Imaging Neuroscience University College London
The General Linear Model
Linear Hierarchical Modelling
Group analyses Thanks to Will Penny for slides and content
Statistical Parametric Mapping
The general linear model and Statistical Parametric Mapping
SPM2: Modelling and Inference
The General Linear Model
Hierarchical Models and
The General Linear Model (GLM)
Variance components and Non-sphericity
Contrasts & Statistical Inference
Bayesian Inference in SPM2
Wellcome Trust Centre for Neuroimaging University College London
Linear Hierarchical Models
The General Linear Model
Mixture Models with Adaptive Spatial Priors
WellcomeTrust Centre for Neuroimaging University College London
The General Linear Model
Wellcome Dept. of Imaging Neuroscience University College London
The General Linear Model
Wellcome Dept. of Imaging Neuroscience University College London
Contrasts & Statistical Inference
Wellcome Trust Centre for Neuroimaging University College London
Presentation transcript:

Wellcome Dept. of Imaging Neuroscience University College London Group analyses Will Penny Wellcome Dept. of Imaging Neuroscience University College London

Data Time fMRI, single subject EEG/MEG, single subject fMRI, multi-subject ERP/ERF, multi-subject Hierarchical model for all imaging data!

Reminder: voxel by voxel model specification parameter estimation Time hypothesis statistic Time Intensity single voxel time series SPM

General Linear Model = + Error Covariance Model is specified by Design matrix X Assumptions about e N: number of scans p: number of regressors

2. Weighted Least Squares Estimation 1. ReML-algorithm L l g 2. Weighted Least Squares Friston et al. 2002, Neuroimage

Hierarchical model Multiple variance components at each level At each level, distribution of parameters is given by level above. What we don’t know: distribution of parameters and variance parameters.

Example: Two level model = + = + Second level First level

Estimation Hierarchical model Single-level model

Group analysis in practice Many 2-level models are just too big to compute. And even if, it takes a long time! Is there a fast approximation?

Summary Statistics approach First level Second level Data Design Matrix Contrast Images SPM(t) One-sample t-test @ 2nd level

Validity of approach The summary stats approach is exact if for each session/subject: Within-session covariance the same First-level design the same All other cases: Summary stats approach seems to be robust against typical violations.

Auditory Data Summary statistics Hierarchical Model Friston et al. (2004) Mixed effects and fMRI studies, Neuroimage

Multiple contrasts per subject Stimuli: Auditory Presentation (SOA = 4 secs) of words Motion Sound Visual Action “jump” “click” “pink” “turn” Subjects: (i) 12 control subjects fMRI, 250 scans per subject, block design Scanning: What regions are affected by the semantic content of the words? Question: U. Noppeney et al.

ANOVA = = = ? ? ? 1st level: 2nd level: 1.Motion 2.Sound 3.Visual 4.Action ? = ? = ? = 2nd level:

ANOVA 1st level: Motion Sound Visual Action ? = ? = ? = 2nd level:

Summary Linear hierarchical models are general enough for typical multi-subject imaging data (PET, fMRI, EEG/MEG). Summary statistics are robust approximation for group analysis. Also accomodates multiple contrasts per subject.