Rapid and Inexpensive Detection of α1-Antitrypsin Deficiency-Related Alleles S and Z by a Real-Time Polymerase Chain Reaction Suitable for a Large-Scale.

Slides:



Advertisements
Similar presentations
Measurement of Relative Copy Number of CDKN2A/ARF and CDKN2B in Bladder Cancer by Real-Time Quantitative PCR and Multiplex Ligation-Dependent Probe Amplification.
Advertisements

Development of a Novel One-Tube Isothermal Reverse Transcription Thermophilic Helicase-Dependent Amplification Platform for Rapid RNA Detection James Goldmeyer,
Quantification of Parvovirus B19 DNA Using COBAS AmpliPrep Automated Sample Preparation and LightCycler Real-Time PCR Stefan Schorling, Gunnar Schalasta,
Clinical Laboratory Analysis of Immunoglobulin Heavy Chain Variable Region Genes for Chronic Lymphocytic Leukemia Prognosis  Philippe Szankasi, David.
An Enhanced Polymerase Chain Reaction Assay to Detect Pre- and Full Mutation Alleles of the Fragile X Mental Retardation 1 Gene  Alessandro Saluto, Alessandro.
EGFR Mutations in Lung Adenocarcinomas
A Prospective Clinical Study on the Use of Reverse Transcription-Polymerase Chain Reaction for the Early Diagnosis of Dengue Fever  Kamaljit Singh, Ajit.
Molecular Diagnostics in Preimplantation Genetic Diagnosis
Simultaneous Genotyping of α-Thalassemia Deletional and Nondeletional Mutations by Real-Time PCR–Based Multicolor Melting Curve Analysis  Qiuying Huang,
Genotyping of DNA Samples Isolated from Formalin-Fixed Paraffin-Embedded Tissues Using Preamplification  Renee Baak-Pablo, Vincent Dezentje, Henk-Jan.
Todd S. Laughlin, Michael W. Becker, Jane L. Liesveld, Deborah A
Locked Nucleic Acids Can Enhance the Analytical Performance of Quantitative Methylation-Specific Polymerase Chain Reaction  Karen S. Gustafson  The Journal.
A Rapid Polymerase Chain Reaction-Based Screening Method for Identification of All Expanded Alleles of the Fragile X (FMR1) Gene in Newborn and High-Risk.
Real-Time Polymerase Chain Reaction for Detecting Bacterial DNA Directly from Blood of Neonates Being Evaluated for Sepsis  Jeanne A. Jordan, Mary Beth.
LightCycler Technology in Molecular Diagnostics
Microfluidic Platform for Single Nucleotide Polymorphism Genotyping of the Thiopurine S-Methyltransferase Gene to Evaluate Risk for Adverse Drug Events 
Isothermal Multiple Displacement Amplification
Establishment and Study of Different Real-Time Polymerase Chain Reaction Assays for the Quantification of Cells with Deletions of Chromosome 7  Elia Mattarucchi,
Yanggu Shi, Sharon F. Terry, Patrick F. Terry, Lionel G
Detection of Cytomegalovirus in Whole Blood Using Three Different Real-Time PCR Chemistries  Erica Vincent, Zhengming Gu, Markus Morgenstern, Candace.
Homogeneous Polymerase Chain Reaction Nucleobase Quenching Assay to Detect the 1-kbp Deletion in CLN3 That Causes Batten Disease  Paul G. Rothberg, Denia.
Protocol for the Use of Polymerase Chain Reaction in the Detection of Intraocular Large B-Cell Lymphoma in Ocular Samples  Aires Lobo, Narciss Okhravi,
Hou-Sung Jung, Gregory J. Tsongalis, Joel A. Lefferts 
DNA Diagnostics by Surface-Bound Melt-Curve Reactions
Simultaneous Genotyping of α-Thalassemia Deletional and Nondeletional Mutations by Real-Time PCR–Based Multicolor Melting Curve Analysis  Qiuying Huang,
Specific Detection of Cytokeratin 20-Positive Cells in Blood of Colorectal and Breast Cancer Patients by a High Sensitivity Real-Time Reverse Transcriptase-Polymerase.
Detection of an Apparent Homozygous 3120G>A Cystic Fibrosis Mutation on a Routine Carrier Screen  Denise LaMarche Heaney, Patrick Flume, Lauren Hamilton,
Real-Time Polymerase Chain Reaction for Detecting Bacterial DNA Directly from Blood of Neonates Being Evaluated for Sepsis  Jeanne A. Jordan, Mary Beth.
Improved Real-Time Multiplex Polymerase Chain Reaction Detection of Methylenetetrahydrofolate Reductase (MTHFR) 677C>T and 1298A>C Polymorphisms Using.
An Enhanced Polymerase Chain Reaction Assay to Detect Pre- and Full Mutation Alleles of the Fragile X Mental Retardation 1 Gene  Alessandro Saluto, Alessandro.
Clinical Laboratory Analysis of Immunoglobulin Heavy Chain Variable Region Genes for Chronic Lymphocytic Leukemia Prognosis  Philippe Szankasi, David.
Use of Single Nucleotide Polymorphisms (SNP) and Real-Time Polymerase Chain Reaction for Bone Marrow Engraftment Analysis  Dwight H. Oliver, Richard E.
A 39-bp Deletion Polymorphism in PTEN in African American Individuals
Analytical Detection of Immunoglobulin Heavy Chain Gene Rearrangements in Gastric Lymphoid Infiltrates by Peak Area Analysis of the Melting Curve in the.
KRAS Mutation The Journal of Molecular Diagnostics
A Multi-Site Study for Detection of the Factor V (Leiden) Mutation from Genomic DNA Using a Homogeneous Invader Microtiter Plate Fluorescence Resonance.
Absence of the Caveolin-1 P132L Mutation in Cancers of the Breast and Other Organs  Shinya Koike, Yasuhiro Kodera, Akimasa Nakao, Hiroji Iwata, Yasushi.
Detection of FLT3 Internal Tandem Duplication and D835 Mutations by a Multiplex Polymerase Chain Reaction and Capillary Electrophoresis Assay  Kathleen.
Development of a Quantitative Real-Time Polymerase Chain Reaction Assay for the Detection of the JAK2 V617F Mutation  Elizabeth C. Wolstencroft, Katy.
Allele-Specific, Non-Extendable Primer Blocker PCR (AS-NEPB-PCR) for DNA Mutation Detection in Cancer  Haiying Wang, John Jiang, Bianca Mostert, Anieta.
Molecular Diagnostics in Preimplantation Genetic Diagnosis
A Novel Semiquantitative Fluorescence-Based Multiplex Polymerase Chain Reaction Assay for Rapid Simultaneous Detection of Bacterial and Parasitic Pathogens.
EGFR Mutations in Lung Adenocarcinomas
Rapid One-Step Carrier Detection Assay of Mucolipidosis IV Mutations in the Ashkenazi Jewish Population  Feras M. Hantash, Susan C. Olson, Ben Anderson,
Larissa V. Furtado, Helmut C. Weigelin, Kojo S. J
Julie Di Cristofaro, Monique Silvy, Jacques Chiaroni, Pascal Bailly 
Detection of Common Disease-Causing Mutations in Mitochondrial DNA (Mitochondrial Encephalomyopathy, Lactic Acidosis with Stroke-Like Episodes MTTL
Design and Evaluation of a Real-Time PCR Assay for Quantification of JAK2 V617F and Wild-Type JAK2 Transcript Levels in the Clinical Laboratory  Jason.
Detection of the JAK2 V617F Mutation by LightCycler PCR and Probe Dissociation Analysis  Marla Lay, Rajan Mariappan, Jason Gotlib, Lisa Dietz, Siby Sebastian,
Human Urine Contains Small, 150 to 250 Nucleotide-Sized, Soluble DNA Derived from the Circulation and May Be Useful in the Detection of Colorectal Cancer 
Simultaneous Amplification, Detection, and Analysis of Common Mutations in the Galactose-1-Phosphate Uridyl Transferase Gene  Mohamed Jama, Lesa Nelson,
Development of an Allele-Specific Real-Time PCR Assay for Discrimination and Quantification of p63 R279H Mutation in EEC Syndrome  Vanessa Barbaro, Letizia.
Performance and Clinical Evaluation of a Sensitive Multiplex Assay for the Rapid Detection of Common NPM1 Mutations  Michael Hafez, Fei Ye, Keith Jackson,
Rapid and Sensitive Real-Time Polymerase Chain Reaction Method for Detection and Quantification of 3243A>G Mitochondrial Point Mutation  Rinki Singh,
Rebecca L. Margraf, Rong Mao, Carl T. Wittwer 
Low Incidence of Minor BRAF V600 Mutation-Positive Subclones in Primary and Metastatic Melanoma Determined by Sensitive and Quantitative Real-Time PCR 
Amplification Refractory Mutation System, a Highly Sensitive and Simple Polymerase Chain Reaction Assay, for the Detection of JAK2 V617F Mutation in Chronic.
Rapid Polymerase Chain Reaction-Based Detection of Epidermal Growth Factor Receptor Gene Mutations in Lung Adenocarcinomas  Qiulu Pan, William Pao, Marc.
Characterization and mutation analysis of the human FORMIN-2 (FMN2) gene in women with unexplained infertility  David A. Ryley, M.D., Hsin-Hung Wu, M.D.,
Improved Detection of KIT Exon 11 Duplications in Formalin-Fixed, Paraffin-Embedded Gastrointestinal Stromal Tumors  Jerzy Lasota, Bartosz Wasag, Sonja.
Rapid Allelic Discrimination by TaqMan PCR for the Detection of the Gilbert's Syndrome Marker UGT1A1*28  Ursula Ehmer, Tim O. Lankisch, Thomas J. Erichsen,
Two Novel Methods for Rapid Detection and Quantification of DNMT3A R882 Mutations in Acute Myeloid Leukemia  Melissa Mancini, Syed Khizer Hasan, Tiziana.
Karen Snow-Bailey, Ph.D., 1961–2006
Development and Comparison of a Rapid Isothermal Nucleic Acid Amplification Test for Typing of Herpes Simplex Virus Types 1 and 2 on a Portable Fluorescence.
Wook Lew  Journal of Investigative Dermatology 
Analytical Evaluation of Primer Engineered Multiplex Polymerase Chain Reaction– Restriction Fragment Length Polymorphism for Detection of Factor V Leiden.
Visual Format for Detection of Mycobacterium tuberculosis and M
A Prospective Clinical Study on the Use of Reverse Transcription-Polymerase Chain Reaction for the Early Diagnosis of Dengue Fever  Kamaljit Singh, Ajit.
Xiangfeng Cui, Helen Feiner, Honghua Li 
Monique A. Johnson, Marvin J. Yoshitomi, C. Sue Richards 
Presentation transcript:

Rapid and Inexpensive Detection of α1-Antitrypsin Deficiency-Related Alleles S and Z by a Real-Time Polymerase Chain Reaction Suitable for a Large-Scale Population- Based Screening  Marcin P. Kaczor, Marek Sanak, Andrew Szczeklik  The Journal of Molecular Diagnostics  Volume 9, Issue 1, Pages 99-104 (February 2007) DOI: 10.2353/jmoldx.2007.060048 Copyright © 2007 American Society for Investigative Pathology and Association for Molecular Pathology Terms and Conditions

Figure 1 Ethidium bromide-stained agarose gel showing results of amplification and digestion in RFLP method (DNA size marker, pBR322 DNA/AluI). MM samples should be interpreted as non-PI*S and non-PI*Z. The Journal of Molecular Diagnostics 2007 9, 99-104DOI: (10.2353/jmoldx.2007.060048) Copyright © 2007 American Society for Investigative Pathology and Association for Molecular Pathology Terms and Conditions

Figure 2 Automated laser fluorescence electrophoresis. First trace, DNA size marker (pBR322 DNA/AluI); next five traces, RFLP assay for PI*S mutation detection; and the last five, for PI*Z allele. In the case of PI*Z heterozygotes, some inequality of the peaks is seen, not interfering with the interpretation of results. MM samples should be interpreted as non-PI*S and non-PI*Z. The Journal of Molecular Diagnostics 2007 9, 99-104DOI: (10.2353/jmoldx.2007.060048) Copyright © 2007 American Society for Investigative Pathology and Association for Molecular Pathology Terms and Conditions

Figure 3 Real-time PCR with dual-labeled fluorescent probes. PCR amplification plots were baseline-subtracted and fitted automatically by the software. Increase in fluorescence is expressed in relative fluorescence units (RFU). ROX dye labeled the probe for a wild-type allele (A); FAM marked the probe for a mutant allele (B). The genotypes were automatically scored using allelic discrimination graph for ROX versus FAM (C). See Results for details. The Journal of Molecular Diagnostics 2007 9, 99-104DOI: (10.2353/jmoldx.2007.060048) Copyright © 2007 American Society for Investigative Pathology and Association for Molecular Pathology Terms and Conditions