Precision Cardiovascular Medicine: State of Genetic Testing

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Date of download: 7/2/2016 Copyright © 2016 American Medical Association. All rights reserved. From: Clinical Interpretation and Implications of Whole-Genome.
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Precision Cardiovascular Medicine: State of Genetic Testing John R. Giudicessi, MD, PhD, Iftikhar J. Kullo, MD, Michael J. Ackerman, MD, PhD  Mayo Clinic Proceedings  Volume 92, Issue 4, Pages 642-662 (April 2017) DOI: 10.1016/j.mayocp.2017.01.015 Copyright © 2017 Mayo Foundation for Medical Education and Research Terms and Conditions

Figure 1 A rational approach to cardiovascular genetic testing, rare variant interpretation, and the reassessment of variants of unknown/uncertain significance. Light orange boxes denote basic considerations pertaining to the initiation of genetic testing. Yellow boxes denote key steps in the classification of rare genetic variation based on American College of Medical Genetics and Genomics (ACMG) criteria. Blue boxes denote basic considerations pertaining to the identification of a rare variant of unknown/uncertain significance that currently lacks sufficient evidence to either upgrade or downgrade its probability of pathogenicity. Allele frequency of more than 5% or greater than widely accepted estimates of disease prevalence in the Exome Aggregation Consortium (ExAC), Exome Sequencing Project (ESP), or 1000 Genomes Project serve as stand-alone or strong evidence that a variant is likely benign, respectively. GOF = gain of function; LOF = loss of function; WT = wild-type. Mayo Clinic Proceedings 2017 92, 642-662DOI: (10.1016/j.mayocp.2017.01.015) Copyright © 2017 Mayo Foundation for Medical Education and Research Terms and Conditions

Figure 2 The spectrum of genetic variation underlying the heritable component of commonly encountered cardiovascular disorders (CVDs). At the severe (orange) end of the spectrum are extremely rare disease-causative mutations with strong effects on gene function that typically result in monogenic disorders such as long QT syndrome, hypertrophic cardiomyopathy, and familial hypercholesterolemia. (FH). In the middle of the spectrum (blue) are rare variants with moderate effects on gene function that rarely produce disease in isolation but in the presence of one or more second hits result in disease as seen in some instances of arrhythmogenic cardiomyopathy. Lastly, at the benign (brown) end of the spectrum are common variants with weak effects on gene function that may confer disease risk when multiple risk-associated common variants are present together with environmental risk factors for disorders such as coronary heart disease (CHD) and atrial fibrillation (AF). In recognition that the genetic basis of most heritable CVDs is variable, yellow triangles denote the spectrum of genetic variation underlying each CVD or class of CVDs. Adapted from Transl Res,19 with permission from Elsevier. Mayo Clinic Proceedings 2017 92, 642-662DOI: (10.1016/j.mayocp.2017.01.015) Copyright © 2017 Mayo Foundation for Medical Education and Research Terms and Conditions

Figure 3 Refinement of clinical disease risk estimates with the use of genetic risk scores. Generalized schematic shows how an aggregate genetic risk score can be used to refine the risk assessment in individuals at intermediate risk for disease based on clinical risk factors. Mayo Clinic Proceedings 2017 92, 642-662DOI: (10.1016/j.mayocp.2017.01.015) Copyright © 2017 Mayo Foundation for Medical Education and Research Terms and Conditions