A Chest Imaging Platform Slicer Extension module

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Presentation transcript:

A Chest Imaging Platform Slicer Extension module Applied Chest Imaging Laboratory Boston, Massachusetts. USA Lung Lesion Analyzer A Chest Imaging Platform Slicer Extension module

Overview Goal: localize, segment and analyze lung lesions and their surroundings Localize: The module includes Maximum Intensity Projection tools in order to help to localize the lesions faster. Segment: Starting from a landmark in the lesion, the module performs an automatic segmentation Analyze: Choose between dozens of metrics not only in the lesion, but also in custom radius spheres surrounding it Slicer Chest Imaging Platform – Module Name

Lung Lesion Analyzer 1- Select an input CT image Slicer Chest Imaging Platform – Module Name 1- Select an input CT image

Lung Lesion Analyzer 2- Locate nodule. 2.1- If desired enable Enhance visualization to see the Maximum Intensity Projection. Tip: check MIP viewer module for more details 2.2- When MIP is enabled, select the desired projection Slicer Chest Imaging Platform – Module Name

Lung Lesion Analyzer 3- Place Seeds 3.1- Click on ”New nodule” and click on a point that is clearly inside the lesion to add a new detected nodule. Tip: localize the nodule on the MIP view but add it in the regular window. (view picture) 3.2- If known, select the lesion type. (Nodule/Tumor). Slicer Chest Imaging Platform – Module Name 3.3- If needed, click remove nodule and place a new one.

Lung Lesion Analyzer 4- Segment Nodule Slicer Chest Imaging Platform – Module Name 4.1- Click segment nodule to start the segmentation 4.2- If desired, after the segmentation process is complete, move the bar to fine tune the segmentation

Lung Lesion Analyzer Expected results. Slicer Chest Imaging Platform – Module Name

Lung Lesion Analyzer 5- Run analysis 5.1- Select all the desired parameters for the selected nodule. Slicer Chest Imaging Platform – Module Name 5.2- Select all the desired radius of the sphere around the nodule to analyze. 5.3- Click on “Analyze” to run the analysis. Tip: the result will show the parameters of the selected nodule.

Lung Lesion Analyzer 5.4- Click on Show to highlight a sphere Expected results. Slicer Chest Imaging Platform – Module Name 5.5- To obtain the parameters for all the placed nodules, enable analyze all nodules and start analysis.

Lung Lesion Analyzer 6- Export data. 6.1- Click ”Open” to view a table with the results Tip: Export data if desired. Slicer Chest Imaging Platform – Module Name 6.2- Export data file. Tip: Save the file with .csv extension.

Lung Lesion Analyzer The Lung Lesion Analyzer is part of the Chest Imaging Platform extension for 3D Slicer (www.chestimagingplatform.org) This work is funded by the National Heart, Lung, And Blood Institute of the National Institutes of Health under Award Number R01HL116931. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health. Contributors: Jorge Onieva Applied Chest Imaging Laboratory Brigham and Women's Hospital Harvard Medical School Slicer Chest Imaging Platform – Parenchymal Analysis