Phylogeny of the order Corallimorpharia (Cnidaria: Hexacorallia)

Slides:



Advertisements
Similar presentations
©2011 Elsevier, Inc. Molecular Tools and Infectious Disease Epidemiology Betsy Foxman Chapter 7 Omics Analyses in Molecular Epidemiologic Studies.
Advertisements

microhabitat specialization in parasitic lice:
1 Molecular epidemiology of lyssaviruses in Eurasia Dr Lorraine McElhinney Veterinary Laboratories Agency (Weybridge), UK.
LG 4 Outline Evolutionary Relationships and Classification
NON-ELECTRONIC SOURCES OF BIOGEOGRAPHICAL DATA Daphne G. Fautin Ecology and Evolutionary Biology and KU Natural History Museum and Biodiversity Research.
Life On Earth Do Now: Scientists estimate that there may be as many as 100,000,000 different species of organisms on Earth. Of these, about 1 x 107 have.
Biogeography Chapter 11 History of Lineages and Biotas.
Reading Phylogenetic Trees Gloria Rendon NCSA November, 2008.
Organizing Life’s Diversity
Fig Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings Overview: Investigating the Tree of Life Phylogeny is the.
Reconstructing and Using Phylogenies
Reading Phylogenetic Trees
Systematics Study of the diversity of organisms to classify them and determine their evolutionary relationships Taxonomy: naming, identifying and classifying.
The evolutionary history of a species The study/process of tracing the phylogeny of organisms to construct an evolutionary “Big Picture” relationships.
Corals and sea anemones on line: a functioning biodiversity database D. G. Fautin R. W. Buddemeier University of Kansas: Department of Ecology and Evolutionary.
BIOE 109 Summer 2009 Lecture 4- Part II Phylogenetic Inference.
Diversity and systematics of sea anemones
A study of the present knowledge and missing information
Sea anemones (Cnidaria: Actiniaria, Corallimorpharia) of the deep northeastern Pacific Ocean: a baseline survey. W.E. Eash-Loucks University of Kansas.
HABITAT ANALYSIS INCORPORATING NOMENCLATURAL AND TAXONOMIC INFORMATION Daphne G. Fautin Ecology & Evolutionary Biology Natural History Museum University.
Evolution of column morphology in Aliciidae inferred from a molecular phylogeny A.L. Crowther*, P. Cartwright*, M. Daly^, & D.G. Fautin* * The University.
The occurrence of corallimorpharians (naked corals) Daphne G. Fautin Department of Ecology and Evolutionary Biology and Natural History Museum University.
BIODIVERSITY OF REEFS: INFERRING FROM SPARSE DATA Daphne G. Fautin Ecology & Evolutionary Biology Natural History Museum University of Kansas Photo by.
Corals and sea anemones on line: a functioning biodiversity database D. G. Fautin and R. W. Buddemeier University of Kansas: Department of Ecology and.
Online Common Names Database for Hexacorallia Dan Atwater Ecology and Evolutionary Biology Dr. Daphne Fautin, advisor.
Understanding Coral Histology - How & Why - Ha-Rim Cha Division of Invertebrate Zoology The Natural History Museum of University of Kansas and Biodiversity.
A Searchable Cnidae Database: A Potential Resource for Taxonomic Determination in the Phylum Cnidaria Ryan Schulze The University of Kansas,
Visualization of Spatial Data in Marine Biogeographic Information Systems Steven Perry and Daphne G. Fautin Department of Ecology and Evolutionary Biology,
CHAPTER 25 TRACING PHYLOGENY. I. PHYLOGENY AND SYSTEMATICS A.TAXONOMY EMPLOYS A HIERARCHICAL SYSTEM OF CLASSIFICATION  SYSTEMATICS, THE STUDY OF BIOLOGICAL.
Comparing Sea Anemone Diversity in the Arctic and Antarctic Justin Buck and Daphne Fautin Ecology and Evolutionary Biology, University of Kansas Natural.
Two New Species of Zoanthids from Southern California and Southern Australia by Nick Philipp Division Invertebrate Zoology KUMNH Department of Ecology.
GENERIC RESUSCITATION AND REDESCRIPTION OF ACTINOTRYX SANCTITHOMAE DUCHASSAING DE FOMBRESSIN AND MICHELOTTI, 1860 (CNIDARIA: ANTHOZOA: CORALLIMORPHARIA)
Classification and phylogeny
Bell Work Dogs of a certain breed can have black fur or white fur. Black fur is dominant, but the breeder only wants puppies with white fur. Cross two.
Chapter 2 Opener How do we classify organisms?. Figure 2.1 Tracing the path of evolution to Homo sapiens from the universal ancestor of all life.
Topic : Phylogenetic Reconstruction I. Systematics = Science of biological diversity. Systematics uses taxonomy to reflect phylogeny (evolutionary history).
Phylogeny & The Tree of Life. Phylogeny  The evolutionary history of a species or group of species.
Systematics The study of biological diversity in an evolutionary context.
Molecular Phylogeny of the Pectinidae Family Jill Hansen, Lou Puslednik, and Jeanne Serb Ecology, Evolution, and Organismal Biology, Iowa State University,
A Phylogenetic Analysis of the Early Late Ordovician Orthograptinae (Graptolithina) Sue Klosterman Charles Mitchell Dan Goldman.
Classification and Systematics Tracing phylogeny is one of the main goals of systematics, the study of biological diversity in an evolutionary context.
LECT 4. What is Cloning? The terms recombinant DNA technology, DNA cloning, molecular cloning, or gene cloning all refer to the same process: the transfer.
Assembling the Tree of Life Diana Lipscomb Program Director, Systematic Biology Program National Science Foundation.
Warm-Up 1.Contrast adaptive radiation vs. convergent evolution? Give an example of each. 2.What is the correct sequence from the most comprehensive to.
Phylogenetic Trees  Importance of phylogenetic trees  What is the phylogenetic analysis  Example of cladistics  Assumptions in cladistics  Frequently.
Chapter 26 Phylogeny and the Tree of Life
Lecture 2: Principles of Phylogenetics
SYSTEMATICS OF THE MESOCHORINAE (INSECTA: HYMENOPTERA: ICHNEUMONIDAE) Lee, Jong-Wook and Kyong-In Suh Department of Biology, Yeungnam University Kyong-San.
PHYLOGENY AND THE TREE OF LIFE Chapter 26 Sections 1-3 and 6.
Classifying the Diversity of Life Targets: 17. State the goals of taxonomy. 18. Describe how evolutionary biology and molecular biology influence classification.
PHYLOGENY and SYSTEMATICS CHAPTER 25. VOCABULARY Phylogeny – evolutionary history of a species or related species Systematics – study of biological diversity.
Phylogeny & the Tree of Life
PHYLOGENY AND THE TREE OF LIFE CH 26. I. Phylogenies show evolutionary relationships A. Binomial nomenclature: – Genus + species name Homo sapiens.
Phylogeography of Leucetta chagosensis (Porifera, Calcarea) Christoph Flucke, Jens Kurz, Rasmus Liedigk, Zdenka Valenzova Fig.4: RAxML Phylogram Fig.5:
Classification. Cell Types Cells come in all types of shapes and sizes. Cell Membrane – cells are surrounded by a thin flexible layer Also known as a.
Northern Star Coral (Astrangia poculata) Populations from the New Jersey Coast. Abstract- This project investigated the distribution and molecular evolution.
{ Early Earth and the Origin of Life Chapter 15.  The Earth formed 4.6 billion years ago  Earliest evidence for life on Earth  Comes from 3.5 billion-year-old.
Phylogenetic analysis of flatfish species (Teleostei, Pleuronectiformes) based on cytochrome oxidase 1 (Co-1) and cytochrome b (Cyt-b) genes Sharina S.N.,
Systematics and Phylogenetics Ch. 23.1, 23.2, 23.4, 23.5, and 23.7.
Reconstructing and Using Phylogenies 16. Concept 16.1 All of Life Is Connected through Its Evolutionary History All of life is related through a common.
Phylogeny & Systematics The study of the diversity and relationships among organisms.
Phylogeny and the Tree of Life
Phylogeny and the Tree of Life
Kingdom: Animalia Phylum: Cnidaria
Time morphospace. time morphospace time morphospace.
Chapter 19 Molecular Phylogenetics
Porifera, Cnidaria and Ctenophora Specimen Lab
Molecular phylogenetic analysis of RNA polymerase II largest-subunit protein sequences from various trichomonads, including D. fragilis. Molecular phylogenetic.
Tree depicting the phylogenetic relationships of all strains included in this study. Tree depicting the phylogenetic relationships of all strains included.
16S rRNA-based phylogeny of sponge-associated cyanobacteria and chloroplasts. 16S rRNA-based phylogeny of sponge-associated cyanobacteria and chloroplasts.
Presentation transcript:

Phylogeny of the order Corallimorpharia (Cnidaria: Hexacorallia) Hi, Good Afternoon~ My name is Ha-Rim Cha and I am a graduate student of department of EEB. My doctoral research focuses on systematics of the order Corallimorpharia and today I would like to talk about the phylogenetic study of this taxon. Harim Cha Department of Ecology and Evolutionary Biology Natural History Museum & Biodiversity Research Center The University of Kansas harim@ku.edu

Corallimorpharia Coral-like sea anemones One of six orders of Hexacorallia Coral-like sea anemones Solitary or clonal polyps without skeleton Current Classification four families, 12 genera, and 50 species Widely distributed from tropical to polar areas and from shallow to deep water Adorian Ardelean George Miller Corallimorpharia is one of six orders of Zoantharia, and because of intermediate characters between stony corals and sea anemones, this groups is often called “coral-like sea anemones.” Members of Corallimorpharia are solitary or colonial polyps without skeleton, and the size of polyp is from 10 mm to 500 mm in width of oral disc. According to the current classification, four families, 14 nominal genera, and 50 species are included. Corallimorpharians distribute very widely in the seas. From tropical to polar area and from shallow to deep water. The horizontal and vertical wide range of distribution allow the significance of the global scale research of this group. Also, these animals are one of the beauty of underwater biota and also in aquariums. In spite of its beauty, the order Corallimorpharia is one of questionable taxon in scientific perspectives. Within the order, although there is literature inventorying corallimorpharians, not only the species composition of this order but also the number of valid genera have been unclear because of incomplete diagnosis among genera and the inconsistency in usage among orders. Also, as I mentioned earlier of this slides, corallimorpharians have attributes of both orders Actiniaria and Scleractinia. So, the systematic position of this taxon has been disputed and most of precious hypotheses based on morphology differ between authors depending on the characters focused. Vincent B. Hargreaves

Corallimorpharia Questions about relationships within the order Cylindrical body (CO I) Family Sideractiidae Family Corallimorphidae Plate-like body (CO II) Family Ricordeidae Family Discosomatidae The first question is the relationship within the order. The relationship between two different morphological groups in the order, the one is cylindrical body group which has capitate or digiform tentacles, and the other is plate-like body group that can be characterized by low column and numerous reduced tentacles, is still questionable. Vincent B. Hargreaves Vincent B. Hargreaves

Corallimorpharia Questions about relationship between Corallimorpharia and orders Actiniaria (sea anemones) and Scleractinia (stony corals) Hypothesis 1 Hypothesis 2 SC CO AC SC CO AC The second question is for the relationship among orders. Based on the different two group of morphology within corallimorpharians, the order Corallimorpharia may not be a monophyletic group. This hypothesis has been supported by several molecular studies. More expanding study is the relationship between corallimorpharia and two closest orders, stony corals and sea anemones. There are three hypothesis for the relationship. My animals are different but may be close to stony corals rather than with sea anemones. OR, three orders may have evolved independently, OR Corallimorpharia may not an order and a part of two other orders. Molecular studies? 28S rDNA (Chen et al. 1995) - polyphyly 16S mtDNA (Romane and Cairns 200) - paraphyly 18S rDNA (Bernston et al. 1999) - paraphyly Immonulogical study? Fautin and Lowenstein 1992 - non monophyly Hypothesis 3 Hypothesis 4 SC CO AC SC CO CO AC

Phylogenetic hypothesis based on molecular data a. Fautin & Lowenstein (1994): radioimmunoassay b. Chen et al. (1995): 28S rRNA c. France et al. (1996): 16S rRNA d. Daly et al. (2003): Morphology, 16S, 18S, 28S e. Medina et al. (2006): mtDNA

Phylogenetic analysis using morphological characters Major characters used for analysis: Calcareous exoskeleton Polyp shape / size Tentacle shape / number / arrangement Nature of mesenteries and mesenterial arrangement Muscle development Nematocyst composition Life style – solitary or clonal Habitat Zooxanthellae Methods: 32 morphological characters 12 genera of Corallimorpharia, 6 genera of Scleractinia, and 11 genera of Actiniaria Outgroup: genus Cerianthus Maximum parsimony criterion, 1000 bootstrap replicates

Maximum Parsimony analysis (CI = 0.58, RI = 0.69) Corallimorpharia (CO) Scleractinia (SC) Actiniaria (AC) Ceriantharia (CE) CO I CO II Maximum Parsimony analysis (CI = 0.58, RI = 0.69) Strict consensus tree of 12 equally parsimonious trees Number of parsimony informative characters = 30

Phylogenetic analysis using molecular characters Genes sequenced: 16S mtDNA (1233 bp), 28S rDNA (345 bp), 18S rDNA (1836 bp) Taxon sampling: Corallimorpharia - more than one genus of each family except family Sideractidae - collected from Oman and Caribbean - borrowed from the Field Museum Scleractinia - Robust and Complex groups Actiniaria - at least one taxon of each tribe Outgroup: Genus Cerianthus MacClade 4.0 and PAUP 3.3.1 Maximum likelihood Maximum parsimony – 2000 bootstrap replicates So, I did phylogenetic analysis using morphological characters of corallimorpharian genera and three genera of Actiniaria and Scleractinia. I used 32 characters that are collected from my own observations using type species and non-type species of each genus. Three genera of each Scleractinia and Actiniaria were added for analysis. Genus Cerianthus was chosen for the outgroup. For the analysis, MacClade and PAUP were used. Each transformation series has equal weight. And all characters unordered when analyzed. The heuristic method and Branch-and Bound search were used for searching the most parsimonious tree because of the number of taxa we consider. Accelerated transformation (ACCTRAN) was used for optimization of character states.

Results 16S mtDNA Maximum Likelihood Maximum Parsimony analysis Robust Scleractinia (RS) Maximum Parsimony analysis Strict consensus of 9 equally parsimonious trees Number of parsimony-informative characters: 498 Complex Scleractinia (CS) Ceriantharia (CE) Robust Scleractinia (RS) As a result, I got a 50% majority-rule strict consensus tree was computed based on 16 equally parsimonious trees. Corallimorpharia (CO) CO II Corallimorpharia (CO) CO I Complex Scleractinia (CS) Actiniaria (AC) Actiniaria (AC) Ceriantharia (CE)

28S rDNA maximum likelihood analysis CO CS AC CE RS CO II CO I CE CO AC Scleractinia CO II CO I

Summary of results Phylogeny based on morphological characters 1) Plate-like corallimorpharians are more closely related to deep-sea cylindrical corallimorpharians (genera Corallimorphus, Sideractis, Nectactis, and Sphincteractis) than to shallow-water ones. 2) Corallimorpharia is a monophyletic group 3) Corallimorpharia is a sister taxon of Scleractinia Each gene gives a different signal on phylogenetic relationships of Corallimorpharia 1) 16S mtDNA: Corallimorpharia is monophyletic and a sister taxon of the Complex group of Scleractinia 2) 28S rDNA: Corallimorpharia is monophyletic and a sister taxon of Scleractinia 3) 18S rDNA: Corallimorpharia is within Scleractinia Based on the result, the order Corallimorpharia may not be a monophyletic group. Second, two families of Corallimorpharia are clustered to actiniarian genera and two families are clustered to scleractinian genera. This result supports one of hypothesis about the relationship which claims a part of corallimorpharians may belong to Actiniaria and the others may belong to Scleractinia. And the tree show clear clustering pattern of two different morphological groups within the order.

Further study Better molecular markers are required to resolve higher level phylogeny of Hexacorallia Extensive morphological data including polyp anatomy of scleractinians may help to clarify the position of corallimorpharians Data from deep-sea corallimorpharians (family Sideractidae) will complete sampling of corallimorpharians and may be able to provide new insights on corallimorpharian phylogeny

Acknowledgments Dr. Daphne Fautin and all lab people Dr. Adorian Ardelean (WHOI) Dr. Paulyn Cartwright (KU) Dr. Rachel Collin (STRI) Dr. Meg Daly (OSU) Mr. Matthew Kost (KU) Ms. Abby Reft Dr. Sandra Romano (UVI) NSF grant 9978106 in the program Partnerships to Enhance Expertise in Taxonomy (PEET) to Dr. Daphne Fautin KU Natural History Museum and Biodiversity Research Center Department of Ecology and Evolutionary Biology, KU