Biodiversity Informatics 101

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Presentation transcript:

Biodiversity Informatics 101 Theme 2 : Who's who in Australia’s natural history biodiversity informatics? Nicole Fisher & Shelley James

240 yr time-series (1770-today) of biological specimens Australia 240 yr time-series (1770-today) of biological specimens globally unique : ~ 8% of the world’s plant & animal species only about 25% of Australia’s species have been described >200 NH collections 3 largest herbaria >1.2 million specimens ea. 38 herbaria, >8 million specimens, 250 staff (IH estimates) > 34M biological specimens ~ 20% is databased 1 l Who's who in Australia’s natural history biodiversity informatics? I Nicole Fisher & Shelley James

>$50 million investment Sharing biodiversity knowledge >$50 million investment Leading the digital transformation in the sharing of biodiversity knowledge IT & engagement professionals Partners – founding & beyond >63 million records >4500 data sets >460 spatial layers >8.5 billion records downloaded Data specimens occurrence images, sounds literature sequences tissues more coming…e.g. indigenous National Research infrastructure Australian Node System data capture & aggregation data management data discovery data visualisation data analysis & reporting Open source, open access, open infrastructure globalisation, 10+ countries public data policies 2 l Who's who in Australia’s natural history biodiversity informatics? I Nicole Fisher & Shelley James

ALA platform for other countries … ALA seen as a leader in biodiversity e-infrastructure as it was 1 of the first sites worldwide to aggregate existing biodiversity data into 1 place and provide tools to analyse and visualise data. More info : http://www.gbif.org/living-atlases 3 l Who's who in Australia’s natural history biodiversity informatics? I Nicole Fisher & Shelley James

ALA builds on the work of the community ALA fortunate to be able to build on existing tools & previous efforts of others bringing together biological data.  4 l Who's who in Australia’s natural history biodiversity informatics? I Nicole Fisher & Shelley James

Where to for Australia’s collections information? http://collections.ala.org.au/ Natural History Collections (NHC) register designed to provide information about the natural history collections held in Australian museums, herbaria, universities, government departments, CSIRO & to provide access to their digitised records. 5 l Who's who in Australia’s natural history biodiversity informatics? I Nicole Fisher & Shelley James

Collections communities ------councils/heads of collections------ Flora community : CHAH (Council of Heads of Australasian Herbaria) - responsible for major Australian and New Zealand Herbaria, Oceania representatives HISCOM (Herbarium Information Systems Committee)  subcommittee of CHAH computing & information technology programs, deals with the application of new technologies in herbarium management, botanical research & information delivery. Faunal community : CHAFC (Council of Heads of Australian Faunal Collections) - peak body representing Australia’s zoological & palaeontological collections FCIG (Faunal Collections Informatics Group) subcommittee of CHAFC discuss the technical aspects of sharing biological data, and manage the OZCAM, Australia's Fauna website. ------subcommittees------ 6 l Who's who in Australia’s natural history biodiversity informatics? I Nicole Fisher & Shelley James

ALA Specimen collection browser http://specimens.ala.org.au/ 7 l Who's who in Australia’s natural history biodiversity informatics? I Nicole Fisher & Shelley James

ALA Specimen collection browser http://specimens.ala.org.au/ 8 l Who's who in Australia’s natural history biodiversity informatics? I Nicole Fisher & Shelley James

Bulk samples (soups) http://insectsoup.australianmuseum.net.au/ Contact : Paul Flemons (Australia Museum) 9 l Who's who in Australia’s natural history biodiversity informatics? I Nicole Fisher & Shelley James

- Australia’s transcription centre (ALA & Aus. Mus.) More tools & resources - Australia’s transcription centre (ALA & Aus. Mus.) - enabling digital data collection (ALA) - Australia’s Virtual Herbaria (driven by ALA) - Online Zoological Collections of Australian Museums (ALA) - linking literature to specimens (Mus. Vic.) - social network, web-based, community, biodiversity workspace (Mus. Vic & ALA) - Taxonomic backbone 10 l Who's who in Australia’s natural history biodiversity informatics? I Nicole Fisher & Shelley James

Jennifer Strotman, Holly Little, Deb Paul Organisers of SPNHC 2017 Acknowledgements iDigBio & sponsors Jennifer Strotman, Holly Little, Deb Paul Organisers of SPNHC 2017 Nicole Fisher National Research Collections of Australia e nicole.fisher@csiro.au w www.csiro.au/en/Research/Collections/Digitisation Shelley James Manager Collections National Herbarium of NSW e shelley.james@rbgsyd.nsw.gov.au w www.rbgsyd.nsw.gov.au/Science-Conservation/Herbarium