Saccharomyces Genome Database (SGD)

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Presentation transcript:

Saccharomyces Genome Database (SGD) Rama Balakrishnan AmiGO Tutorial Saccharomyces Genome Database (SGD) Stanford University

What is AmiGO? Web application that reads from the GO Database Allows to browse the ontologies annotations from various species compare sequences (Gost)

AmiGO http://www.godatabase.org Graphical View

Some basics Is_a relationship Part_of relationship Node has children, can be clicked to view children Node has been opened, can be clicked to close Leaf node or no children

Browsing the Ontologies

Click on the term name to view term details and annotations

Term details links to representations of this term in other databases Annotations from various species

Term Tree View

Annotations associated with a term Annotation data are from the gene_associations file submitted by the annotating groups

Graphical View for the term: DNA replication

Searching by gene product name

Advanced search

GOST-Gene Ontology blaST Blast a protein sequence against all gene products that have a GO annotation.

GOst

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