Daphnis De Pooter on behalf of the WoRMS data management team

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Presentation transcript:

Daphnis De Pooter on behalf of the WoRMS data management team Introduction to WoRMS, the World Register of Marine Species Daphnis De Pooter on behalf of the WoRMS data management team

WoRMS in a nut shell Not just a name-index, but expert-based taxonomic database 277 taxonomic editors Elected Steering Committee (SC) (12+1 members) Data management team Permanent host institute: VLIZ => “here to stay” Web-based system, including web-services International standards WoRMS aims to provide the most authoritative list of names of all marine species globally, ever published Accepted names but also unaccepted names. WoRMS links them.

Regional species databases Externally hosted and managed species databases ... FishBase Turbellaria AlgaeBase Reptiles Regional species databases ERMS AfReMaS RAMS CaRMS Databases hosted at VLIZ Aphia platform Thematic species databases HAB WoRDSS WRIMS Global species databases Porifera Cetacea Polychaeta Hydrozoa Mollusca Base IRMNG* Compositae WoRMS Isopoda FreshGen Figure 2: XXX Blue: species database with focus on marine environment; Orange: species database dealing with all environments (marine-fresh-terrestrial); Yellow: species database with focus on freswhater environment; Green: species database with focus on terrestrial environment. WoRMS: World Register of Marine Species; IRMNG: Interim Register for Marine and Non-marine Genera; AfReMaS: African Register of Marine Species; CaRMS: Canadian Register of Marine Species; RAMS: Register of Antarctic Marine Species; ERMS: European Register of Marine Species; HAB: IOC-UNESCO Taxonomic Reference List of Harmful Micro Algae; WRIMS: World Register of Introduced Marine Species; WoRDSS: World Register of Deep-Sea Species. *: IRMNG is focused on genera, not species. Vandepitte et al., in press

Haliclona (Soestella) xena Databases hosted at VLIZ Aphia Haliclona (Soestella) xena WoRMS Thematic species databases ... HAB WoRDSS Introduced Global species databases ... Porifera Cetacea Polychaeta Hydrozoa Mollusca Base Regional species databases ... ERMS AfReMaS RAMS CaRMS Identical to previous slide, but with an example to illustrate the fact that a name only gets added once into the Aphia database and – based on its characteristics: taxonomical, geographical or other – it gets a specific context (or contexts) and can be shown in several of the available species registers. Haliclona (Soestella) xena De Weerdt, 1986 => marine sponge species, alien & european WoRMS structure An example…

WoRMS – fostered by a large editorial network Taxonomic & thematic editors 277 people 45 countries 205 institutes An updated map can be retrieved from http://www.marinespecies.org/map.php?type=te

WoRMS management Different levels… WoRMS Steering Committee WoRMS editors Taxonomic editors Thematic editors Data management team Editorial actions : “checked” (from editor or global species database) “Trusted” (from regional or thematic species database) “unreviewed” (from other sources)

WoRMS - content Aphia: a lot more than just taxon names & their relationship… Aphia Taxonomy Sources Distribution Attributes Links Notes Images Internal database management Specimen Vernacular names Identification keys Feeding type Host-parasite relations Body size Fossil range Skeleton (calcareous or not)

WoRMS - content Minimal Species name - authority & publication year - higher classification Environment Status (recent – fossil – recent & fossil) Highly desired Basionym Reference of original publication Holotype information (type locality, museum collection, number …) Optional Additional syonyms, references, images, morphological description, distribution, ecological information (feeding type, host-parasite relation …), web links & pdfs

WoRMS – where are we? Some number crunching… Taxonomy: 242,445 accepted marine species; of which 93% is checked 476,833 species names including synonyms (marine & Recent) 610,811 taxon names (infraspecies to kingdoms) 59,207 images; of which 55% is checked Still a number of (historical) gaps to fill => work in progress Increment of 1,500 - 2,000 newly described species per year Usage: ± 90,000 unique visitors per month ± 3 million hits per month 56 registered users of our web services > 80 institutes/organisations received access to download a monthly copy of WoRMS

Online interface

WoRMS – taxonomic backbone for OBIS All OBIS taxon names are being matched against WoRMS If no match is found in WoRMS, additional databases are consulted and – if necessary – the WoRMS editors are contacted for help

WoRMS – OBIS: mutual geographical quality control Echinoidea example – Psammechinus miliaris Needs checking in OBIS …

Questions? Read more: Vandepitte, L.; Vanhoorne, B.; Decock, W. et al. (in press). How Aphia – the platform behind several online and taxonomically oriented databases – can serve both the taxonomic community and the field of biodiversity informatics. JMSE. Costello, M.J.; Bouchet, P.; Boxshall, G. et al. (2013). Global coordination and standardisation in marine biodiversity through the World Register of Marine Species (WoRMS) and related databases. PLoS One 8(1): 20 pp. hdl.handle.net/10.1371/journal.pone.0051629 Appeltans, W.; Ahyong, S.T.; Anderson, G. et al. (2012). The magnitude of global marine species diversity. Curr. Biol. 22(23): 14 pp + suppl. inf (91 pp.). hdl.handle.net/10.1016/j.cub.2012.09.036