Laboratory virology. From Medical Microbiology, 5 th ed., Murray, Rosenthal & Pfaller, Mosby Inc., 2005, Table 51-1. Specimens for viral diagnosis.

Slides:



Advertisements
Similar presentations
Experiment five Isolation and Identification of influenza virus.
Advertisements

Laboratory Diagnosis Microscopic ex Virus cultivation Serological tests Detection of N/A.
Viral Infection Detection. Clinical examinations & findings Antibody detection Electron Microscopic: SEM & TEM Molecular assays: PCR Detection of viral.
 Classification of animal viruses › Taxonomic criteria based on  Genomic structure  DNA or RNA  Single-stranded or double-stranded  Virus particle.
Virus Quantification & Neutralization
Virology Lab 6.
Diagnostic Microbiology and Immunology
CELL CULTURE AND DIAGNOSTIC VIROLOGY. Since the discovery by Enders (1949) that polioviruses could be cultured tissue, cell culture has become a very.
Introduction to the Viruses: General properties of viruses: 1-They are very small in size, from  m. 2-They contain one kind of nucleic acid (RNA.
ISOLATION, QUANTIFICATION AND identification OF VIRUSES
Lab-3 By: Dr.Malak El-Hazmi Assistant Professor & Consultant Virologist College of Medicine & KKUH.
Agglutination tests HA & HI.
Copyright © 2004 Pearson Education, Inc., publishing as Benjamin Cummings PowerPoint ® Lecture Slide Presentation prepared by Christine L. Case Microbiology.
Virus Isolation in tissue culture & Virus Quantitation Lab 5.
Laboratory Diagnosis of Virus Infections
Laboratory Diagnosis of Viral Infection
Virology practice Dr. Y. Hamadt Allah Elhaj Ass. Prof. medical microbiology.
Branches of Microbiology Bacteriology Virology Mycology Parasitology Immunology Recombinant DNA technology.
VIRUS REPLICATION PETER H. RUSSELL, BVSc, PhD, FRCPath, MRCVS Department of Pathology and Infectious Diseases, The Royal Veterinary College, Royal College.
BTY328: Viruses Dr William Stafford
LABORATORY DIAGNOSIS OF VIRAL INFECTIONS. In developing countries, virological specimens will need to be transferred from district laboratories to regional.
Development of Standard Reagents for WNV NAT M. Rios, A. Grinev, K. Sirnivasan, O. Wood, S. Daniel, I. Hewlett CBER/FDA.
CH34:LABORATORY DIAGNOSIS PREPARD BY: Basel Auda PRESENTED TO: Dr.Abdelraouf El Manamma Islamic University Gaza.
Lab Diagnosis of Viruses Dr Syed Suhail Ahmed College of Medicine Qassim University.
LAB. DIAGNOSIS OF VIRUSES 5 methods are used for diagnosis in the virology laboratory: 1.Direct microscopy 2.Cultivation of viruses 3.Serology 4. Detection.
Processing of Clinical Specimen for Immunofluorescence staining & Viral culture Exercise II – Day 4 Virology Section Department of Microbiology JIPMER.
Antigen antibody reaction. Virus neutralization Virus Neutralization Tests 1. Hemagglutination inhibition test Hemagglutination inhibition test is widely.
professor in microbiology
Virology 1.4-Virus Cultivation and Assays How do you grow viruses and then determine how many there are in a sample? (Physical, Chemical, Biological approaches)
Clinical Virology: Part One Introduction MLAB 2434 – Microbiology Keri Brophy-Martinez.
METHODS IN VIROLOGY.
Methods in Virology.
© 2004 Wadsworth – Thomson Learning Chapter 19 Diagnostic Immunology.
Diagnosis of viral infections
THE LABORATORY DIAGNOSIS OF VIRAL INFECTIONS
Cell Culture and Diagnostic Virology
Cell Culture and Diagnostic Virology
Chapter 17 Immunization and Immune Testing
An Introduction to the Viruses
Virology Lab 6.
TISSUE Culture and Virology
Haemagglutination assay
Introduction to Animal Tissue culture
Cultivation of Viruses
LAB. DIAGNOSIS OF VIRUSES
Influenza hemagglutination assay
Plaque Forming Unit (PFU)
Growing Viruses Viruses must be grown in living cells
Laboratory Diagnosis of Viral Infection
Annapoorni Rangarajan, Sue J. Hong, Annie Gifford, Robert A. Weinberg 
ISOLATION, QUANTIFICATION AND identification OF VIRUSES
Introduction to Virology
Continuous cell line.
Practical Virology Lab. (1)
Volume 14, Issue 3, Pages (September 2013)
Viral Diseases How To Diagnose By: Dr. Amr. Viral Diseases How To Diagnose By: Dr. Amr.
Cell Culture and Diagnostic Virology
Immunological testing
Volume 16, Issue 5, Pages (November 2014)
Introduction to Virology
Hemagglutinin-targeting Artificial MicroRNAs Expressed by Adenovirus Protect Mice From Different Clades of H5N1 Infection  Xinying Tang, Hongbo Zhang,
Incorporation of the B18R Gene of Vaccinia Virus Into an Oncolytic Herpes Simplex Virus Improves Antitumor Activity  Xinping Fu, Armando Rivera, Lihua.
Measurement of Immune function:
Volume 6, Issue 1, Pages (July 2009)
Today’s Lecture Overview
Cultivation of Viruses
Introduction to Virology
Volume 17, Issue 3, Pages (March 2015)
Introduction to Virology
Volume 16, Issue 10, Pages (October 2008)
Presentation transcript:

Laboratory virology

From Medical Microbiology, 5 th ed., Murray, Rosenthal & Pfaller, Mosby Inc., 2005, Table Specimens for viral diagnosis

Growth of virus on embryonated eggs Davis, Duylbecco, Eisen, Ginsberg “Microbiology” 4 th ed, J.B. Lippincott 1990, Fig. 48-1

Primary cell culture + enzymes time

Subculture enzymes time

Growth of cells in culture. A primary culture is defined as the original plating of cells from a tissue, grown to a confluent monolayer, without subculturing. A cell strain (solid line) is defined as a euploid population of cells subcultivated more than once in vitro, lacking the property of indefinite serial passage. Cell strains ultimately undergo degeneration and death, also called crisis or senescence. A cell line (dashed line) is an aneuploid population of cells that can be grown in culture indefinitely. Spontaneous transformation or alteration of a cell strain to an immortal cell line can occur at any time during cultivation of the cell strain. The time in culture and corresponding number of subcultivations or passages are shown on the abscissas. The ordinate shows the total number of cells that would accumulate if all were retained in culture. (From Fields Virology, 4 th ed, Knipe & Howley, eds, Lippincott Williams & Wilkins, 2001 Fig. 2-2.) Cell culture

Cultured cells Primary –Heterogeneous – many cell types –Closest to animal –Technical hassle Diploid cell strain –Relatively homogeneous – fewer cell types –Further from animal –Technically less hassle Continuous cell line –Immortal –Most homogeneous –Genetically weird – furthest from animal –Hassle free –Suspension or monolayer

Transformation Immortalization Loss of contact inhibition Anchorage independence –Growth in soft agar –Growth in suspension Tumor formation in athymic (nude) mice

Cultured cell morphologies Epithelial-like (human lung carcinoma, A549 ) Fibroblast like (baby hamster kidney, BHK) Fields Virology, 4th ed, Knipe & Howley, eds, Lippincott Williams & Wilkins, 2001, Fig. 2-3

CPE: Measles on human lung carcinoma (A549) Fields Virology, 4th ed, Knipe & Howley, eds, Lippincott Williams & Wilkins, 2001, Fig. 2-4

CPE: vaccinia on monkey kidney (BSC40) Low multiplicity of infection (moi) single plaque High moi, 48 hr Fields Virology, 4th ed, Knipe & Howley, eds, Lippincott Williams & Wilkins, 2001, Fig. 2-4

From Medical Microbiology, 5 th ed., Murray, Rosenthal & Pfaller, Mosby Inc., 2005, Fig Hemadsorption

From Medical Microbiology, 5 th ed., Murray, Rosenthal & Pfaller, Mosby Inc., 2005, Fig Cytolology: CPE

From Medical Microbiology, 5 th ed., Murray, Rosenthal & Pfaller, Mosby Inc., 2005, Fig Cytology: inclusion bodies

1:100 1: virus serial dilution plate 1 ml plaques (1000)(100,000)(10,000) Titer = 1 x 10 7 pfu/ml Plaque assay: method

Plaque assay (the real thing) vaccinia Fields Virology, 4th ed, Knipe & Howley, eds, Lippincott Williams & Wilkins, 2001, Fig. 2-5

Transformation loss of contact inhibition

Focus formation by transforming viruses Focus assay. Monolayers of the NIH3T3 mouse fibroblast cell line were infected with Maloney murine sarcoma virus. The top two panels show photomicrographs of uninfected cells (left) and a single virus-induced focus (right). The bottom two panels show stained dishes of uninfected (left) and infected (right) cells. Foci are clearly visible as darker areas on the infected dish. (From Fields Virology, 4th ed, Knipe & Howley, eds, Lippincott Williams & Wilkins, 2001, Fig. 2-6)

= infected = uninfected Endpoint titration Five replicate wells of cells are infected with one ml of each of four different virus dilutions, incubated, and scored for infection by looking for CPE. In this example, the final titer is TCID 50 per ml. (TCID = tissue culture infective dose) replicate samplings dilution

Titer = 32 HA units/ml Hemagglutination test: method 1:8 1: virus serial dilution mix with red blood cells side view top view

Hemagglutination assay. Seven different samples of influenza virus, numbered 1 through 7 at the left, were serially diluted as indicated at the top, mixed with chicken red blood cells (RBC), and incubated on ice for 1 to 2 hours. Wells in the bottom row contain no virus. Agglutinated RBCs coat wells evenly, in contrast to nonagglutinated cells, which form a distinct button at the bottom of the well. The HA titer, shown at the right, is the last dilution that shows complete hemagglutination activity. (From Fields Virology, 4th ed, Knipe & Howley, eds, Lippincott Williams & Wilkins, 2001, Fig. 2-8) Hemagglutination assay: influenza virus

Direct electron microscopic particle count. An electron micrograph of a spray droplet containing 15 latex beads (spheres) and 14 vaccinia virus particles (slightly smaller, brick-shaped particles). (From Fields Virology, 4th ed, Knipe & Howley, eds, Lippincott Williams & Wilkins, 2001, Fig. 2-7.) Direct particle count

MethodAmount (per ml) Direct electron microscope count10 10 EM particles Quantal infectivity assay in eggs10 9 egg ID 50 Quantal infectivity assay by plaque formation10 8 pfu Hemagglutination assay10 3 HA units Comparison of quantitative methods Fields Virology, 4th ed, Knipe & Howley, eds, Lippincott Williams & Wilkins, 2001, Table 2-4

From Medical Microbiology, 5 th ed., Murray, Rosenthal & Pfaller, Mosby Inc., 2005, Box Assays for viral proteins and nucleic acids

From Medical Microbiology, 5 th ed., Murray, Rosenthal & Pfaller, Mosby Inc., 2005, Fig Antigen, antibody detection

From Medical Microbiology, 5 th ed., Murray, Rosenthal & Pfaller, Mosby Inc., 2005, Fig Antibody detection: western blot

Summary 4 main clinical diagnostic techniques –Culture, serology, antigen detection, nucleic acid detection Virus culture –Cultured cell types –Cytopathic effect –Not all viruses can be cultured Virus quantitation –Biological –Physical Basic serological techniques