Rotation about Aromatic amide Bonds A Computational Project Evan Grassi and Donald D. Clarke Department of Chemistry, Fordham University James B Foresman,

Slides:



Advertisements
Similar presentations
NMR - Recall From Last Week
Advertisements

162 Chapter 19: Carboxylic Acid Derivatives: Nucleophilic Acyl Substitution 19.1: Nomenclature of Carboxylic Acid Derivatives (please read)
Nitrogen Compounds Aims: To know that these include amines, amides, nitro compounds, nitriles and amino acids. To know that amines are derivatives of ammonia.
AMINES Dr. Sheppard CHEM 2412 Fall 2014 McMurry (8 th ed.) sections:24.2, 24.3, 24.4, 24.6, 24.7, 24.9,
Table 12-1, p. 425.
The basis of MRI scanning
Nuclear Magnetic Resonance (NMR) Spectroscopy
165 Chapter 20: Carboxylic Acid Derivatives: Nucleophilic Acyl Substitution 20.1: Nomenclature of Carboxylic Acid Derivatives (please read)
Using NMR Spectra to Analyze Molecular Structure 10-4 The position of an NMR absorption of a nucleus is called its chemical shift. Chemical shifts depend.
1 Quizzes and Results from an Organic Chemistry Molecular Modeling Study American Chemical Society New York City September 11, 2003 Jim Hermanson & Julie.
Infrared spectroscopy of Li(methylamine) n (NH 3 ) m clusters Nitika Bhalla, Luigi Varriale, Nicola Tonge and Andrew Ellis Department of Chemistry University.
1 Amides and Amines: Organic Nitrogen Compounds Chapter 25 Hein * Best * Pattison * Arena Colleen Kelley Chemistry Department Pima Community College ©
AMINES Dr. Sheppard CHEM 2412 Summer 2015 Klein (2 nd ed.) sections: 23.1, 23.2, 23.3, 23.13, 23.4, 23.5, 23.6, 23.8.
NMR Theory and C-13 NMR. Nuclear Magnetic Resonance Powerful analysis – Identity – Purity No authentic needed Analyze nuclei – 1 H, 13 C, 31 P, etc –
Conclusions The spin density surfaces of the antiferromagnetic ground states demonstrate opposite spins at the ends, and alternating spins along the length.
On the orientation of substituents in N-methyl- and N, N-dimethyl- anilines in the excited state Narasimha H Ayachit
Nuclear Magnetic Resonance Spectroscopy Dr. Sheppard Chemistry 2412L.
Chapter 3 Nuclear Magnetic Resonance Spectroscopy Many atomic nuclei have the property of nuclear spin. When placed between the poles of a magnet, the.
Week 11 © Pearson Education Ltd 2009 This document may have been altered from the original State that NMR spectroscopy involves interaction of materials.
Synthetic Approach to 5,6-Benzo-1-azabicyclo[2.2.2]octan- 2-one: A Lactam having Zero Resonance Energy Meghan Tobin, Dr. Arthur Greenberg, Jessica Morgan.
Created with MindGenius Business 2005® Chemical Shift (1) Chemical Shift (1) ν is measured in Hz and varies with spectrometer frequency The position of.
Interpreting Carbon NMR Spectra
Units of Unsaturation This is also called “Degrees of Unsaturation” or “Double Bond Equivalents (DBE)”. By looking at a molecular formula, it is possible.
CH 908: Mass Spectrometry Lecture 4 Interpreting Electron Impact Mass Spectra – Continued… Recommended: Read chapters 8-9 of McLafferty Prof. Peter B.
CHEM 344 Spectroscopy of Organic Compounds Lecture 1 4th and 5 th September 2007.
Modeling Remote Interactions Docking,  -Stacking, Stereorecognition, and NMR Chemical Shift Calculations.
Spectral Characteristics of the Benzene Ring
SDBS Integrated Spectral Database for Organic Compounds Sample Search for Chemistry 130 Grace Baysinger and Dr. Dave Keller.
Identification of Organic Compounds by GC/MS, IR & NMR Marcela James.
Practice problems on the NMR of amino acids Test your ability to correlate NMR spectra with structure by trying the following problems. Use the correlation.
Prediction of NMR Chemical Shifts. A Chemometrical Approach К.А. Blinov, Y.D. Smurnyy, Т.S. Churanova, М.Е. Elyashberg Advanced Chemistry Development (ACD)
Figure 8.3 gives the basic layout of a continuous wave NMR spectrometer. These intruments were the original type of instrument and have largely.
Spectroscopy Chemistry 3.2: Demonstrate understanding of spectroscopic data in chemistry (AS 91388)
Chapter 13 Nuclear Magnetic Resonance Spectroscopy
SPECTROPHOTOMETRY PRACTICAL 213 PHC INSTUMENTAL ANALYSIS.
Spectroscopy of Amides
California State University, Monterey Bay CHEM312
Spectral Interpretation General Process for Structure Elucidation of an Unknown Nat. Prod. Rep., 1999, 16,
MOLECULAR STRUCTURE ANALYSIS NMR Spectroscopy VCE Chemistry Unit 3: Chemical Pathways Area of Study 2 – Organic Chemistry.
Modeling Remote Interactions Docking,  -Stacking, Stereorecognition, and NMR Chemical Shift Calculations.
THE CHEMISTRY OF AMINES By Dr. Nahed Nasser. AMINES CONTENTS Structure and classification Nomenclature Physical properties Basic properties Preparation.
2.4 CLASSIFICATION OF UV ABSORPTION BANDS
NMR Theory From physics we know that a spinning charge has an associated magnetic field. All nuclei have positive charge. Some nuclei have “spin” and are.
“Structure Elucidation”-Comprehensive Spectral Interpretation
2D NMR.
Prepared by Dr. Upali Siriwardane For CHEM 281 Lab
Department of chemistry Smt. K. R. P. Kanya Mahavidyalaya, Islampur
Nuclear Magnetic Resonance (NMR) Spectroscopy
Figure 1. Phenethylamine 1H FT-NMR Spectrum in CDCl3 at 400 MHz.
Fundamentals of Organic Chemistry
Phenols ……………………………….…………....(4-7ppm)
Benzene & Aromatic Compounds
Homo-halogen Bonding in 2-iodo-perfluoroalkane
1H NMR Interpretation Number of Signals (Resonances)
Introduction to NMR Spectroscopy
Lauren Butkus and Dr. Carolyn Weinreb
Advanced Pharmaceutical Analysis H1 NMR Examples
CH 14-3: Unknown Analysis of Benzene
Introduction to NMR Spectroscopy
Fundamentals of Organic Chemistry CHAPTER 8: AMINES
Introduction to NMR Spectroscopy
Insights into molecular structural changes of kerogen during thermal evolution investigated by advanced solid-state NMR spectroscopy Jingdong Mao Department.
Amines Structure Organic derivatives of ammonia, NH3.
Introduction to NMR Spectroscopy
Fundamentals of Organic Chemistry
Fundamentals of Organic Chemistry
Benzene and Aromaticity
Advanced Pharmaceutical Analysis
Organic Chemistry CHEM 145
Presentation transcript:

Rotation about Aromatic amide Bonds A Computational Project Evan Grassi and Donald D. Clarke Department of Chemistry, Fordham University James B Foresman, Department of Physical Sciences York College of Pennsylvania July 26, 2014 Mercury Conference

Preparation of substituted benzenes is a frequent experiment in organic lab; an example of this is 4-bromo-2-nitroacetanilide. It was stated in textbooks of 1970’s vintage that it can be made only by indirect means. A microscale procedure was described in J. Chem. Educ. 1994, 71, A144-5.

6H 5H H3

4-Br-2-NO2-acetanilide in CDCl 3 NH H6 H3H5CHCl 3

The 1 H NMR spectrum of 4-bromo-2- nitroacetanilide was first reported in J. Org. Chem. 1968, 33, by a group from Temple University and Sadtler Research Labs. They noted that additivity rules failed to predict the observed spectrum in CDCl 3. Such a 4-substituted derivative allowed clear distinction of the proton at H-3 which has only m-coupling from that at H-6 which has both o- and p-coupling.

Note: H-E at 7.15 ppm is missing

The 1 H NMR spectrum of 2-nitroacetanilide is still reported in databases [e,g. SDBS] as well as in a more recent publication [Z Naturforschung 2006, 61a, 59] using the misassignment of H-3 and H-6 predicted by additivity rules. The correct assignment mentioned above is ignored in the literature. Previously we observed that the 1 H NMR spectrum of 2-nitroacetanilide was quite different in CDCl 3 and DMSO-d 6. This is true of 4-bromo-2-nitroacetanilide or other 4- substituted 2-nitroacetanilides, e.g. 4-CH 3 and 4-Fluoro.

4-Br-2-NO 2 -acetanilide in DMSO NH H3 H5 H6

The Sadtler group explained the deviations from additivity as due to strong H bonding between the nitro and NH groups. The NH shift moves from 7.5 ppm in acetanilide to 10.3 ppm in 2-nitroacetanilide confirming the strong H bonding. This is not changed in going from CDCl 3 to DMSO, hence H bonding doesn’t explain the deviations from additivity. Rather rotation about the amide bond does.

H3H4H5H6 2-Nitroacetanilide in DMSO

Calculation of the change in chemical shift of the aromatic ring protons as the amide group of 2-nitroacetanilide is rotated using Gaussian is shown above. H6 changes greatly as a result of such rotation while the other protons change minimally. The angle of the acetamido group to the plane of the ring is near 50 o in CDCl 3 while it is close to 90 o in DMSO. This explains the reversal in the order of shifts of H3 and H6 in going from CDCl 3 to DMSO as solvent.

It is apparent that acetyl is a useful reporter group for studying aromatic amines. The free amines show very little difference in 1 H chemical shifts between spectra taken in CDCl 3 and DMSO. We first became aware of this type of behavior when studying 4-halo-2- hydroxyacetanilides [Monatsh Chemie. 1993, 124, 367].

Because the light absorption spectrum of 2- nitroacetanilide changes markedly on hydrolysis, it has been used as a popular substrate for assaying the aryl acylamidase activity of butylcholinesterase [EC ] since More polar solvents decrease the intensity of its absorption indicating a decrease of electron release by the lone pair of electrons on the N atom to the  system of the ring as the amide group moves closer to 90 o to the ring plane. This agrees with the conclusion from the NMR studies above.

Acknowledgment We gratefully acknowledge financial support from the National Science Foundation’s Division of Undergraduate Education through Grant DUE # for the NMR spectrometer at Fordham University as well as Faculty Research grant. Also we wish to thank our colleagues in organic lab James Ciaccio, Amy Balija, and Shahrokh Saba for their help in connection with this project.