CgMDR and Excel Addin Overview Denise Warzel Nano WG May 5, 2011.

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Presentation transcript:

cgMDR and Excel Addin Overview Denise Warzel Nano WG May 5, 2011

cgMDR - Overview Actually a suite of products – Registry/Repository (eXist XML DB, with HTML interface) – Query Service Manager (Java, Axis servlet) – Excel Addin (.NET/Microsoft Office SDK) – EA Addin (.NET/EA SDK) (used in OSU openMDR)

cgMDR query workflow Query in Excel or EA QSM Query Registry (cgMDR, caDSR, EVS) Registry Response QSM (Transformation) result-set inserted into Excel or EA

Driven by NMDP Requirements NMDP Curation Team needed an easier way to standardize and harmonized data elements collected on forms for Bone Marrow Donor Program Forms contain question and answers. – Existing process involved a number of tools in order to annotate/align existing form with caDSR CDE’s. Team was using Excel as a platform to record existing forms and associated caDSR metadata annotations.

cgMDR NMDP Enhancements Overview Creation of the Excel Template Expansion and improvement of the Excel Addin – Handling of ISO components (Object Class, Property, Representation Term) Creation of Bulk Loader Uses caDSR 4.0, LexEVS 5.1

NMDP Bulk Load Template Excel Table representing a Form – Contains additional fields allowing semantic annotation of individual questions and answer sets to create Object Class, Property, DEC, VD and CDE components). Designed to be filled in using the cgMDR Excel Addin. Contains basic validation routines to reduce round trips for adding content into caDSR.

cgMDR Addins – Excel Addin Takes Selected Result and inserts it into Excel sheet – Behavior differentiated based on button and result type  Annotate vs Restrict For both, concept or caDSR items information inserted into separate worksheets for review Annotate inserts data into the spreadsheet or UML model Restrict places validation rules on the cells in the spreadsheet – Uses CDE information to constrain data entry

cgMDR Query Service Control Panel Query Service Control Panel – Query and Response handling and display. – Underlying class extended by both Excel and EA addin. Three parts – Control – Service Picker, Query Term Entry – Result List Display – Details Display – Displays information on item selected in Result List

Bulk Loader Loads schema elements (DE, DEC, OC, Concepts, etc) into the caDSR from a XML file that’s conformant to the caDSR schema. – Transforms Excel file into an XML file conformant to caDSR metadata. Based on UML Loader – Uses enhanced UML Loader persistence layer for data storage

Demo Using Excel Addin and QSM, search for and insert CDEs into a blank worksheet to create a spreadsheet for data collection