NanoHUB.org online simulations and more Network for Computational Nanotechnology NCN nanoHUB experiences Scheduling and Managing Work and Jobs on OSG Open.

Slides:



Advertisements
Similar presentations
Network for Computational Nanotechnology Hub-based Simulation and Graphics Hardware Accelerated Visualization for Nanotechnology Applications Wei Qiao.
Advertisements

The Moab Grid Suite CSS´ 06 – Bonn – July 28, 2006.
1 Mark Lundstrom, Director Network for Computational Nanotechnology Discovery Park, Purdue University West Lafayette, IN Cyberinfrastructure for Discovery,
Building Campus HTC Sharing Infrastructures Derek Weitzel University of Nebraska – Lincoln (Open Science Grid Hat)
Network for Computational Nanotechnology (NCN) Purdue, Norfolk State, Northwestern, MIT, Molecular Foundry, UC Berkeley, Univ. of Illinois, UTEP NCN /
Campus High Throughput Computing (HTC) Infrastructures (aka Campus Grids) Dan Fraser OSG Production Coordinator Campus Grids Lead.
NSF Site Visit HYDRA Using Windows Desktop Systems in Distributed Parallel Computing.
Condor and GridShell How to Execute 1 Million Jobs on the Teragrid Jeffrey P. Gardner - PSC Edward Walker - TACC Miron Livney - U. Wisconsin Todd Tannenbaum.
Carol Song Sr. Research Scientist Rosen Center for Advanced Computing Thanks to M. McLennan for the Rappture slides!
Gerhard Klimeck nanoHUB a fully operational science gateway and virtual organization Gerhard Klimeck, Michael McLennan Purdue University Network for Computational.
Gerhard Klimeck Network for Computational Nanotechnology (NCN) Purdue, Norfolk State, Northwestern, MIT, Molecular Foundry, UC Berkeley, Univ. of Illinois,
O C I October 31, 2006Office of CyberInfrastructure1 Enhancing Virtual Organizations Abhi Deshmukh Office of Cyberinfrastructure & Engineering Directorate.
Grid Services at NERSC Shreyas Cholia Open Software and Programming Group, NERSC NERSC User Group Meeting September 17, 2007.
Workload Management Massimo Sgaravatto INFN Padova.
April 2009 OSG Grid School - RDU 1 Open Science Grid John McGee – Renaissance Computing Institute University of North Carolina, Chapel.
Quantum Dots Arindam Ghosh. Organization of large number of nanostructures – scalability Utilize natural forces Organic, inorganic and biological systems.
Swift: A Scientist’s Gateway to Campus Clusters, Grids and Supercomputers Swift project: Presenter contact:
Network for Computational Nanotechnology (NCN) UC Berkeley, Univ.of Illinois, Norfolk State, Northwestern, Purdue, UTEP First Time User Guide to OMEN Nanowire**
QCDgrid Technology James Perry, George Beckett, Lorna Smith EPCC, The University Of Edinburgh.
Volunteer Computing and Hubs David P. Anderson Space Sciences Lab University of California, Berkeley HUBbub September 26, 2013.
A Network for Computational Nanotechnology Mark Lundstrom Electrical and Computer Engineering Purdue University Supported by the National Science Foundation,
April 2006 Science Gateways on the TeraGrid Nancy Wilkins-Diehr Area Director for Science Gateways San Diego Supercomputer Center
High Throughput Computing with Condor at Purdue XSEDE ECSS Monthly Symposium Condor.
Open Science Grid For CI-Days Internet2: Fall Member Meeting, 2007 John McGee – OSG Engagement Manager Renaissance Computing Institute.
OSG Area Coordinators Campus Infrastructures Update Dan Fraser Miha Ahronovitz, Jaime Frey, Rob Gardner, Brooklin Gore, Marco Mambelli, Todd Tannenbaum,
PCGRID ‘08 Workshop, Miami, FL April 18, 2008 Preston Smith Implementing an Industrial-Strength Academic Cyberinfrastructure at Purdue University.
Overview of the HUBzero Platform
SAN DIEGO SUPERCOMPUTER CENTER NUCRI Advisory Board Meeting November 9, 2006 Science Gateways on the TeraGrid Nancy Wilkins-Diehr TeraGrid Area Director.
MaterialsHub - A hub for computational materials science and tools.  MaterialsHub aims to provide an online platform for computational materials science.
Open Science Grid For CI-Days Elizabeth City State University Jan-2008 John McGee – OSG Engagement Manager Manager, Cyberinfrastructure.
Grid Workload Management & Condor Massimo Sgaravatto INFN Padova.
Network for Computational Nanotechnology (NCN) Purdue, Norfolk State, Northwestern, MIT, Molecular Foundry, UC Berkeley, Univ. of Illinois, UTEP Multi.
NanoHUB.org online simulations and more Network for Computational Nanotechnology Prof. Mark Lundstrom, Director Prof. Gerhard Klimeck, Technical Director.
Wenjing Wu Andrej Filipčič David Cameron Eric Lancon Claire Adam Bourdarios & others.
Building Scalable Scientific Applications using Makeflow Dinesh Rajan and Douglas Thain University of Notre Dame.
Sep 21, 20101/14 LSST Simulations on OSG Sep 21, 2010 Gabriele Garzoglio for the OSG Task Force on LSST Computing Division, Fermilab Overview OSG Engagement.
HYDRA: Using Windows Desktop Systems in Distributed Parallel Computing Arvind Gopu, Douglas Grover, David Hart, Richard Repasky, Joseph Rinkovsky, Steve.
Instrumentation of the SAM-Grid Gabriele Garzoglio CSC 426 Research Proposal.
Grid Computing at The Hartford Condor Week 2008 Robert Nordlund
14 Aug 08DOE Review John Huth ATLAS Computing at Harvard John Huth.
OSG site utilization by VOs Ilya Narsky, Caltech.
NanoHUB.org and HUBzero™ Platform for Reproducible Computational Experiments Michael McLennan Director and Chief Architect, Hub Technology Group and George.
The project of application for network computing in seismology --The prototype of SeisGrid Chen HuiZhong, Ze Ren Zhi Ma, Hu Bin Institute.
Purdue Campus Grid Preston Smith Condor Week 2006 April 24, 2006.
HUBzero™ Cyberinfrastructure for Outreach, Dissemination, and Collaboration Michael McLennan Senior Research Scientist and Hub Software Architect Rosen.
A Web Laboratory for Visual Interactive Simulation of Epitaxial Growth Feng Liu University of Utah Recently, we have developed a prototype of web laboratory.
What is SAM-Grid? Job Handling Data Handling Monitoring and Information.
Ruth Pordes November 2004TeraGrid GIG Site Review1 TeraGrid and Open Science Grid Ruth Pordes, Fermilab representing the Open Science.
Biomedical and Bioscience Gateway to National Cyberinfrastructure John McGee Renaissance Computing Institute
SEE-GRID-2 The SEE-GRID-2 initiative is co-funded by the European Commission under the FP6 Research Infrastructures contract no Ultra-fast Semiconductor.
11/15/04PittGrid1 PittGrid: Campus-Wide Computing Environment Hassan Karimi School of Information Sciences Ralph Roskies Pittsburgh Supercomputing Center.
NanoHUB.org: Cyberinfrastructure for Research and Education Michael McLennan Software Architect Network for Computational Nanotechnology Purdue University.
February 22-23, Washington D.C. SURA ENDyne Software for Dynamics of Electrons and Nuclei in Molecules. Developed by Dr. Yngve Öhrn and Dr. Erik Deumens,
CMS Usage of the Open Science Grid and the US Tier-2 Centers Ajit Mohapatra, University of Wisconsin, Madison (On Behalf of CMS Offline and Computing Projects)
Network for Computational Nanotechnology (NCN) Gerhard Klimeck Berkeley, Univ. of Florida, Univ.of Illinois, Norfolk State, Northwestern, Purdue, Stanford,
Purdue RP Highlights TeraGrid Round Table May 20, 2010 Preston Smith Manager - HPC Grid Systems Rosen Center for Advanced Computing Purdue University.
Campus Grid Technology Derek Weitzel University of Nebraska – Lincoln Holland Computing Center (HCC) Home of the 2012 OSG AHM!
Building on virtualization capabilities for ExTENCI Carol Song and Preston Smith Rosen Center for Advanced Computing Purdue University ExTENCI Kickoff.
Quarterly Meeting Spring 2007 NSTG: Some Notes of Interest Adapting Neutron Science community codes for TeraGrid use and deployment. (Lynch, Chen) –Geared.
NanoHUB.org online simulations and more Network for Computational Nanotechnology Sebastien Goasguen, Middleware, Purdue Mark Lundstrom, Director, Purdue.
INTRODUCTION TO HIGH PERFORMANCE COMPUTING AND TERMINOLOGY.
Boltzmann Transport Monte Carlo Code - BioMOCA NIH Nanomedicine Center for Design of Biomimetic Nanoconductors Network for Computational Nanotechnology.
Integrating Scientific Tools and Web Portals
A 3D Atomistic Quantum Simulator for Realistic Carbon Nanotube (CNT) Structures Objective: Investigate the electrostatic effect of the 3D environment.
MaterialsHub - A hub for computational materials science and tools.
Office of CyberInfrastructure
Development of the Nanoconfinement Science Gateway
The HUBzero™ Platform for Scientific Collaboration
GLOW A Campus Grid within OSG
Objective: Powerful tool development for atomistic level nanowire FET
Presentation transcript:

nanoHUB.org online simulations and more Network for Computational Nanotechnology NCN nanoHUB experiences Scheduling and Managing Work and Jobs on OSG Open Science Grid Users' Meeting 2007 nanoHUB experiences Steven Clark

nanoHUB.org online simulations and more Network for Computational Nanotechnology NCN nanohub.org The nanoHUB, a web-based resource for research, education, and collaboration in nanotechnology, is an initiative of the NSF-funded Network for Computational Nanotechnology (NCN).

nanoHUB.org online simulations and more Network for Computational Nanotechnology NCN Tools Over 50 tools online! 50 more in the pipeline

nanoHUB.org online simulations and more Network for Computational Nanotechnology NCN Rappture Toolkit Scientist Created by NCN in Nov 2004 Open Source Create standard desktop apps Works with your favorite programming language Rappture =

nanoHUB.org online simulations and more Network for Computational Nanotechnology NCN Growth Simulation users with at least one simulation > 5,370 users > 190,000 simulations (Feb. 2007) technology change! Interactive simulations introduced in April 2005 => 5x increase

nanoHUB.org online simulations and more Network for Computational Nanotechnology NCN Dispatch Grid Jobs –Interactive on demand jobs –Command line submission Time scale: minutes – few hours Time scale: minutes – days,weeks

nanoHUB.org online simulations and more Network for Computational Nanotechnology NCN Command line tool BIOMOCA parametric study –9 month study July 2006 – March 2007 – jobs submitted jobs completed 61 failed due to program error jobs failed due to failures of infrastructure (7.5%) –7 sites utilized (Condor + PBS) Buffalo, Wisconsin, UNM, PSU, Vanderbilt, UC, Purdue –Typical run duration of 3-12 hours – s

nanoHUB.org online simulations and more Network for Computational Nanotechnology NCN biomoca Usage Transport Monte Carlo simulation of conduction in biological Ionic Channels.

nanoHUB.org online simulations and more Network for Computational Nanotechnology NCN Grid verify 43 PASS (47%) 49 FAIL (53%)

nanoHUB.org online simulations and more Network for Computational Nanotechnology NCN Job completion status 80%

nanoHUB.org online simulations and more Network for Computational Nanotechnology NCN Interactive tool Nanowire –Flagship tool for demonstrating grid computing First dispatched grid jobs in 2005 –TeraGrid for MPI –OSG for serial Switched to Violin (nanoHUB maintained virtual cluster) Switched back to OSG, TG in May –Made possible by more robust job submission –FNAL_GPFARM, GLOW-CMS, Purdue-RCAC, UWMilwaukee, Vanderbilt, TG-UC_ANL (MPI)

nanoHUB.org online simulations and more Network for Computational Nanotechnology NCN nanowire Usage Simulate electronic properties of silicon nanowire transistors.

nanoHUB.org online simulations and more Network for Computational Nanotechnology NCN Next in line Embarrassingly Parallel Tools –CNTFET –nanoFET MPI –nanowireMG –PNP Cyclic Peptide Ion Channel Model

nanoHUB.org online simulations and more Network for Computational Nanotechnology NCN CNTFET Usage Simulates ballistic transport properties in 3D Carbon NanoTube Field Effect Transistor (CNTFET) devices

nanoHUB.org online simulations and more Network for Computational Nanotechnology NCN nanoFET Usage Simulates quantum ballistic transport properties in two-dimensional MOSFET devices

nanoHUB.org online simulations and more Network for Computational Nanotechnology NCN nanowireMG Usage 3D Simulator for Silicon Nanowire Field Effect Transistors with Multiple Gates

nanoHUB.org online simulations and more Network for Computational Nanotechnology NCN PNP Cyclic Peptide Usage Simulate ion flow in a system modeled after cyclic peptide ion channels using Poisson-Nernst-Planck (PNP) theory.