1. Mitochondrial Electron Transport The cheetah, whose capacity for aerobic metabolism makes it one of the fastest animals

2. Glucose Pyruvate Acetyl Co A Fatty Acids Amino Acids Citric acid cycle supplies NADH and FADH 2 to the electron transport chain

3. Reduced coenzymes NADH and FADH 2 are formed in matrix from: (1) Oxidative decarboxilation of pyruvate to acetyl CoA (2) Aerobic oxidation of acetyl CoA by the citric acid cycle (3) Oxidation of fatty acids and amino acids The NADH and FADH 2 are energy-rich molecules because each contains a pair of electrons having a high transfer potential.

4. The reduced and oxidized forms of NAD

5. The reduced and oxidized forms of FAD

6. Electrons of NADH or FADH 2 are used to reduce molecular oxygen to water. A large amount of free energy is liberated. The electrons from NADH and FADH 2 are not transported directly to O 2 but are transferred through series of electron carriers that undergo reversible reduction and oxidation.

7. The flow of electrons through carriers leads to the pumping of protons out of the mitochondrial matrix. The resulting distribution of protons generates a pH gradient and a transmembrane electrical potential that creates a protonmotive force.

8. ATP is synthesized when protons flow back to the mitochondrial matrix through an enzyme complex ATP synthase. The oxidation of fuels and the phosphorylation of ADP are coupled by a proton gradient across the inner mitochondrial membrane. Oxidative phosphorylation is the process in which ATP is formed as a result of the transfer of electrons from NADH or FADH 2 to O 2 by a series of electron carriers.

9. OXIDATIVE PHOSPHORYLATION IN EUKARYOTES TAKES PLACE IN MITOCHONDRIA Two membranes: outer membrane inner membrane (folded into cristae) Two compartments: (1) the intermembrane space (2) the matrix Inner mitochondrial membrane: Electron transport chain ATP synthase Mitochondrial matrix: Pyruvate dehydrogenase complex Citric acid cycle Fatty acid oxidation Location of mitochondrial complexes The outer membrane is permeable to small molecules and ions because it contains pore-forming protein (porin). The inner membrane is impermeable to ions and polar molecules. Contains transporters (translocases).

10. THE ELECTRON TRANSPORT CHAIN Series of enzyme complexes (electron carriers) embedded in the inner mitochondrial membrane, which oxidize NADH 2 and FADH 2 and transport electrons to oxygen is called respiratory electron-transport chain (ETC). The sequence of electron carriers in ETC cyt b NADH FMN Fe-S Co-Q Fe-S cyt c 1 cyt c cyt a cyt a 3 O 2 succinate FAD Fe-S

11. High-Energy Electrons: Redox Potentials and Free-Energy Changes In oxidative phosphorylation, the electron transfer potential of NADH or FADH 2 is converted into the phosphoryl transfer potential of ATP. Phosphoryl transfer potential is  G°' (energy released during the hydrolysis of activated phos- phate compound).  G°' for ATP = -7.3 kcal mol -1 Electron transfer potential is expressed as E' o, the (also called redox potential, reduction potential, or oxidation-reduction potential).

12. E' o (reduction potential) is a measure of how easily a compound can be reduced (how easily it can accept electron). All compounds are compared to reduction potential of hydrogen wich is 0.0 V. The larger the value of E' o of a carrier in ETC the better it functions as an electron acceptor (oxidizing factor). Electrons flow through the ETC components spontaneously in the direction of increasing reduction potentials. E' o of NADH = -0.32 volts (strong reducing agent) E' o of O 2 = +0.82 volts (strong oxidizing agent) cyt b NADH FMN Fe-S Co-Q Fe-S cyt c 1 cyt c cyt a cyt a 3 O 2 succinate FAD Fe-S

14. Important characteristic of ETC is the amount of energy released upon electron transfer from one carrier to another. This energy can be calculated using the formula:  G o ’=-nF  E’ o n – number of electrons transferred from one carrier to another; F – the Faraday constant (23.06 kcal/volt mol);  E’ o – the difference in reduction potential between two carriers. When two electrons pass from NADH to O 2 :  G o ’=-2*96,5*(+0,82-(-0,32)) = -52.6 kcal/mol

15. Components of electron- transport chain are arranged in the inner membrane of mitochondria in packages called respiratory assemblies (complexes). THE RESPIRATORY CHAIN CONSISTS OF FOUR COMPLEXES cyt b NADH FMN Fe-S Co-Q Fe-S cyt c 1 cyt c cyt a cyt a 3 O 2 succinate FAD Fe-S I III II IV I II III IV

17. The energy is released not in a single step of electron transfer but in incremental amount at each complex. 26.8 Energy released at three specific steps in the chain is collected in form of transmembrane proton gradient and used to drive the synthesis of ATP.

18. Complexes I-IV Mobile coenzymes: ubiquinone (Q) and cytochrome c serve as links between ETC complexes Complex IV reduces O 2 to water

19. Transfers electrons from NADH to Co Q (ubiquinone) Consist of: - enzyme NADH dehydrogenase (FMN - prosthetic group) - iron-sulfur clusters. NADH reduces FMN to FMNH 2. Electrons from FMNH 2 pass to a Fe-S clusters. Fe-S proteins convey electrons to ubiquinone. QH 2 is formed. Complex I (NADH-ubiquinone oxidoreductase) The flow of two electrons from NADH to coenzym Q leads to the pumping of four hydrogen ions out of the matrix.

20. matrix NADH-Q oxidoreductase - an enormous enzyme consisting of 34 polypeptide chains. L-shaped (horizontal arm lying in the membrane and a vertical arm that projects into the matrix). FMN NADH Iron ions in Fe-S complexes cycle between Fe 2+ or Fe 3+ states. Iron-sulfur clusters contains two or four iron ions and two or four inorganic sulfides. Clusters are coordinated by four cysteine residues. Fe-S

21. Complex II (succinate-ubiquinon oxidoreductase) Transfers electrons from succinate to Co Q. Form 1 consist of: - enzyme succinate dehydrogenase (FAD – prosthetic group) - iron-sulfur clusters. Succinate reduces FAD to FADH 2. Then electrons pass to Fe-S proteins which reduce Q to QH 2 Form 2 and 3 contains enzymes acyl-CoA dehydrogenase (oxidation of fatty acids) and glycerol phosphate dehydrogenase (oxidation of glycerol) which direct the transfer of electrons from acyl CoA to Fe-S proteins. Complex II does not contribute to proton gradient.

22. Ubiquinone Q: - lipid soluble molecule, - smallest and most hydrophobic of all the carriers - diffuses within the lipid bilayer - accepts electrons from I and II complexes and passes them to complex III. All electrons must pass through the ubiquinone (Q)- ubiquinole (QH 2 ) pair.

23. Complex III (ubiquinol-cytochrome c oxidoreductase) Transfers electrons from ubiquinol to cytochrome c. Consist of: cytochrome b, Fe-S clusters and cytochrome c 1. Cytochromes – electron transferring proteins containing a heme prosthetic group (Fe 2+  Fe 3+ ). Oxidation of one QH 2 is accompanied by the translocation of 4 H + across the inner mitochondrial membrane. Two H + are from the matrix, two from QH 2

24. Q-cytochrome c oxidoreductase is a dimer. Each monomer contains 11 subunits. Q-cytochrome c oxidoreductase contains three hemes: two b-type hemes within cytochrome b, and one c-type heme within cytochrome c 1. Enzyme also contains an iron-sulfur protein with an 2Fe-2S center.

25. Q cycle  two molecules of QH 2 are oxidized to form two molecules of Q,  one molecule of Q is reduced to QH 2,  two molecules of cytochrome c are reduced,  four protons are released on the cytoplasmic side,  two protons are removed from the mitochondrial matrix

26. Complex IV (cytochrome c oxidase) Transfers electrons from cytochrome c to O 2. Composed of: cytochromes a and a 3. Catalyzes a four-electron reduction of molecular oxygen (O 2 ) to water (H 2 O): O 2 + 4e - + 4H +  2H 2 O Translocates 2H + into the intermembrane space

27. Cytochrome c oxidase consists of 13 subunits and contains two hemes (two iron atom) and three copper ions, arranged as two copper centers.

28. The Catalytic Cycle of Cytochrome c Oxidise

29. The four protons used for the production of two molecules of water come from the matrix. The consumption of these four protons contributes to the proton gradient. Cytochrome c oxidase pumps four additional protons from the matrix to the cytoplasmic side of the membrane in the course of each reaction cycle (mechanism under study). Totally eight protons are removed from the matrix in one reaction cycle (4 electrons)

30. Cellular Defense Against Reactive Oxygen Species If oxygen accepts four electrons - two molecules of H 2 O are produced single electron - superoxide anion (O 2.- ) two electrons – peroxide (O 2 2- ). O 2.-, O 2 2- and, particularly, their reaction products are harmful to cell components - reactive oxygen species or ROS. DEFENSE superoxide dismutase (manganese-containing version in mitochondria and a copper-zinc-dependent in cytosol) O 2.- + O 2.- + 2H + = H 2 O 2 + O 2 catalase H 2 O 2 + H 2 O 2 = O 2 + 2 H 2 O antioxidant vitamins: vitamins E and C reduced glutathione

31. OXIDATIVE PHOSPHORYLATION This complex mechanical art form can be viewed as a metaphor for the molecular apparatus underlying electron transport and ATP synthesis by oxidative phosphorylation.

32. A PROTON GRADIENT POWERS THE SYNTHESIS OF ATP The transport of electrons from NADH or FADH 2 to O 2 via the electron-transport chain is exergonic process: NADH + ½O 2 + H +  H 2 O + NAD + FADH 2 + ½O 2  H 2 O + FAD +  G o ’ = -52.6 kcal/mol for NADH -36.3 kcal/mol for FADH 2 How this process is coupled to the synthesis of ATP (endergonic process)? ADP + P i  ATP + H 2 O  G o ’=+7.3 kcal/mol

33. Proposed by Peter Mitchell in the 1960’s (Nobel Prize, 1978) Chemiosmotic theory: electron transport and ATP synthesis are coupled by a proton gradient across the inner mitochondrial membrane Mitchell’s postulates for chemiosmotic theory 1.Intact inner mitochondrial membrane is required 2.Electron transport through the ETC generates a proton gradient 3. ATP synthase catalyzes the phosphorylation of ADP in a reaction driven by movement of H + across the inner membrane into the matrix The Chemiosmotic Theory

34. As electrons flow through complexes of ETC, protons are translocated from matrix into the intermembrane space. The free energy stored in the proton concentration gradient is tapped as protons reenter the matrix via ATP synthase. As result ATP is formed from ADP and P i. + +++ + + -- - - Overview of oxidative phosphorylation

35. An artificial system demonstrating the basic principle of the chemiosmotic hypothesis Synthetic vesicles contains bacteriorhodopsin and mitochondrial ATP synthase. Bacteriorhodopsin - protein that pumps protons when illuminated. When the vesicle is exposed to light, ATP is formed.

36. ATP Synthase Two units, F o and F 1 (“knob-and- stalk”; “ball on a stick”) F 1 contains the catalytic subunits where ADP and P i are brought together for combination. F 0 spans the membrane and serves as a proton channel. Energy released by collapse of proton gradient is transmitted to the ATP synthesis.

37. F 1 contains 5 types of polypeptide chains -  3  3  F o - a 1 b 2 c 10-14 (c subunits form cylindrical, membrane- bound base) F o and F 1 are connected by a  stalk and by exterior column (a 1 b 2 and  The proton channel – between c ring and a subunit.

38. there are 3 active sites, one in each  subunit c-  unit forms a “rotor” a-b-  -  3  3 unit is the “stator” passage of protons through the F o channel causes the rotor to spin rotation of the  subunit inside the  3  3 hexamer causes domain movements in the  - subunits, opening and closing the active sites

39. Each  subunit contains the catalytic site. At any given time, each site is in different conformation: open (O), loose (L) or tight (T). O conformation binds ADP and P i The affinity for ATP of T conformation is so high that it converts ADP and P i into ATP.

40. 1. ADP and P i bind to an open site 2. Passage of protons causes each of three sites to change conformation. 3. The open conformation (containing the newly bound ADP and P i ) becomes a loose site. The loose site filled with ADP and Pi becomes a tight site. The ATP containing tight site becomes an open site. 4. ATP released from open site, ADP and P i form ATP in the tight site Binding-Change Mechanism of ATP Synthase

41. Experimental observation of ATP synthase rotation Fluorescent protein arm (actin) attached to  subunits      subunits bound to a glass plate Arm seen rotating when ATP added (observed by microscopy)

42. OXIDATIVE PHOSPHORYLATION Oxidative phosphorylation creates ATP which is the universal currency of free energy in biological systems

43. MOVEMENT ACROSS THE MITOCHONDRIAL MEMBRANES Electrons from Cytosolic NADH Enter Mitochondria by Shuttles NADH is generated in the cytosol in glycolysis. The inner mitochondrial membrane is impermeable to NADH and NAD +. Electrons from NADH, but not NADH itself, are carried across the mitochondrial membrane. Two shuttles move electrons: glycerol 3-phosphate shuttle and malate-aspartate shuttle

44. Glycerol 3-phosphate shuttle Active in skeletal muscles and brain. Electrons enter the electron- transport chain via complex II. Therefore only 1.5 molecules of ATP are produced.

45. Active in heart and liver. 2.5 molecules of ATP are produced. Malate-aspartate shuttle

46. ATP must be transported to the cytosol, and ADP and P i must enter the matrix ADP/ATP carrier, adenine nucleotide translocase, exchanges mitochondrial ATP 4- for cytosolic ADP 3- The exchange causes a net loss of -1 in the matrix (draws some energy from the H + gradient) Phosphate (H 2 PO 4 - ) is transported into matrix in symport with H +. Phosphate carrier draws on  pH. Both transporters consume proton-motive force Active Transport of ATP, ADP and P i Across the Inner Mitochondrial Membrane

47. Mechanism of ATP and ADP Transport ATP-ADP translocase is abundant in the inner mitochondrial membrane (about 14% of the protein) The entry of ADP into the matrix is coupled to the exit of ATP.

48. Mitochondrial Transporters ATP-ADP translocase – antiport of ATP and ADP Phosphate carrier – antiport of H 2 PO 4 - and OH - (symport of H 2 PO 4 - and H + ) Dicarboxylate carrier – antiport of malate, succinate, or fumarate and H 2 PO 4 - Tricarboxylate carrier – antiport of citrate and H + and malate Pyruvate carrier – antiport of pyruvate and OH - (symport of pyruvate and H + )

49. REGULATION OF OXIDATIVE PHOSPHORYLATION Coupling of Electron Transport with ATP Synthesis Electron transport is tightly coupled to phosphorylation. ATP can not be synthesized by oxidative phosphorylation unless there is energy from electron transport. Electrons do not flow through the electron-transport chain to O 2 unless ADP is phosphorylated to ATP. Important substrates: NADH, O 2, ADP Intramitochondrial ratio ATP/ADP is a control mechanism High ratio inhibits oxidative phosphorylation as ATP allosterically binds to a subunit of Complex IV

50. The most important factor in determining the rate of oxidative phosphorylation is the level of ADP. The regulation of the rate of oxidative phosphorylation by the ADP level is called respiratory control Respiratory control

51. Uncoupling of Electron Transport with ATP Synthesis Uncoupling of oxidative phosphorylation generates heat to maintain body temperature in hibernating animals, in newborns, and in mammals adapted to cold. Brown adipose tissues is specialized for thermogenesis. Inner mitochondrial membrane contains uncoupling protein (UCP), or thermogenin. UCP forms a pathway for the flow of protons from the cytosol to the matrix.

52. Uncouplers are lipid-soluble aromatic weak acids Uncouplers deplete proton gradient by transporting protons across the membrane Uncouplers 2,4-Dinitrophenol: an uncoupler Because the negative charge is delocalized over the ring, both the acid and base forms of DNP are hydrophobic enough to dissolve in the membrane.

53. Specific inhibitors of electron transport are invaluable in revealing the sequence of electron carriers. Rotenone and amytal block electron transfer in Complex I. Antimycin A interferes with electron flow thhrough Complex III. Cyanide, azide, and carbon monoxide block electron flow in Complex IV. ATP synthase is inhibited by oligomycin which prevent the influx of protons through ATP synthase. Specific inhibitors of electron transport chain and ATP-synthase

54. Translocation of 3H + required by ATP synthase for each ATP produced 1 H + needed for transport of P i. Net: 4 H + transported for each ATP synthesized For NADH: 10 H + / 4H + ) = 2.5 ATP For FADH 2 : 6 H + / 4 H + = 1.5 ATP ATP Yield Ten protons are pumped out of the matrix during the two electrons flowing from NADH to O 2 (Complex I, III and IV). Six protons are pumped out of the matrix during the two electrons flowing from FADH 2 to O 2 (Complex III and IV). 3 4 2 4