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Common Gene Pages Scott Cain GMOD Coordinator Cold Spring Harbor Laboratory.

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Presentation on theme: "Common Gene Pages Scott Cain GMOD Coordinator Cold Spring Harbor Laboratory."— Presentation transcript:

1 Common Gene Pages Scott Cain GMOD Coordinator Cold Spring Harbor Laboratory

2 What is a common gene page A simple (probably alternate) view of your typical gene page that conforms to a set standard (ie, common)‏

3 Why do it? Who is the target? Standards are good! Computational biologists/bioinformatitians (to compute on large sets)‏ Students Curators from other organisms Any downside? Not that I can think of; it should be easy.

4 What are expected terms? Names, symbols/IDs, synonyms Map locations Gene ontology Database cross-refs, External links (accession, pdb, refseq, genbank, EC number)‏ Literature references Summary Text Species UniProt XML?

5 Example implmentation Daphnia-base:  http://wfleabase.org/lucegene/lookup?id=NCBI_ GNO_292134

6 So, what now The real trick is to get two or more orgs to do this, then it may take off. WormBase? Chado? (which could potentially get lots of orgs)‏


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