1. NERC Environmental Bioinformatics Centre Practical sharing of environmental molecular data Bela Tiwari NERC Environmental Bioinformatics Centre

2. NERC Environmental Bioinformatics Centre CEH Oxford Univ. Manchester EBI Univ. Edinburgh

3. NERC Environmental Bioinformatics Centre A few numbers 101,815,678 entries in Genbank (Rel 170 – Feb 15, 2009) 158,001,051 entries in EMBL (Rel 99 – Feb 26, 2009) 7754276 entries in Uniprot (Rel 14.9 – March 3, 2009) 56217 structures in PDB (March 3, 2009) 11448 experiments in GEO 7723 experiments in ArrayExpress 18702298 entries in PubMed (March 9, 2009) 1762936 entries in PubMed Central (March 9, 2009)

4. NERC Environmental Bioinformatics Centre Structured web forms for (simple) sequence submissions

5. NERC Environmental Bioinformatics Centre Software for general sequence submissions

6. NERC Environmental Bioinformatics Centre NERC Environmental Bioinformatics Centre http://nebc.nox.ac.uk

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9. NERC Environmental Bioinformatics Centre Impacts on data collected in the areas including: –Biodiversity –Climate Change –Energy –Health –Nutrition A community based ontology for describing the environment of an organism or biological sample The 'Env' Initiative Representing environmental research in reporting requirements, data models, data exchange format, controlled vocabularies and ontologies. http://environmentontology.org/

10. NERC Environmental Bioinformatics Centre http://nebc.nox.ac.uk/envbase

11. NERC Environmental Bioinformatics Centre http://handlebar.sf.net

12. NERC Environmental Bioinformatics Centre Bio-Linux http://www.bio-linux.net

13. NERC Environmental Bioinformatics Centre http://www.mibbi.org

14. NERC Environmental Bioinformatics Centre Terminizer http://terminizer.org

15. NERC Environmental Bioinformatics Centre http://nebc.nox.ac.uk/envbase

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17. NERC Environmental Bioinformatics Centre Bioinvestigation Index and ISAcreator http://www.ebi.ac.uk/bioinvindex

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21. NERC Environmental Bioinformatics Centre Acknowledgements NEBC CEH Oxford Dawn Field Bela Tiwari Tim Booth Jorge Soares Hanny Nuhu University of Manchester Dave Hancock Norman Morrison EBI Chris Taylor NERC Pamela Kempton Jason Snape Mark Thorley University of Manchester Giles Velarde EBI Susanna Sansone Philippe Rocca-Serra University of Manchester Mark Blaxter Many EG and PGP Researchers!

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23. NERC Environmental Bioinformatics Centre The slides following this one were not in the presentation, but were kept in this file in case questions were asked where they would be useful.

24. NERC Environmental Bioinformatics Centre MICheckout: Supporting Users

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27. NERC Environmental Bioinformatics Centre Training and Support Software and Standards Development Bioinformatics Workstations NEBC Data Management

28. NERC Environmental Bioinformatics Centre Data volumes have trends like this

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30. NERC Environmental Bioinformatics Centre In practice… Data policy Standards Software Data management Support