Presentation is loading. Please wait.

Presentation is loading. Please wait.

The Promise of Open Access Philip E. Bourne PhD University of California San Diego Open Access Day October 14, 2008

Published byJanice Lambert Modified over 8 years ago

Similar presentations

Presentation on theme: "The Promise of Open Access Philip E. Bourne PhD University of California San Diego Open Access Day October 14, 2008"— Presentation transcript:

1 The Promise of Open Access Philip E. Bourne PhD University of California San Diego pbourne@ucsd.edu www.sdsc.edu/pb Open Access Day October 14, 2008 http://openaccessday.org/

2 Open Access Day October 14, 2008 2 Some Background & Prejudices Editor in Chief of PLoS Computational Biology Associate Director Protein Data Bank Strong supporter of OA but.. –Not religious about it –Recognize there must be an associated business model to achieve longevity –See it existing with closed access for some time to come Driven by the promise of new opportunities for scientific dissemination and comprehension….

3 It is My Excitement about the Promise of Open Access that I am Going to Try and Impart Here

4 Open Access Day October 14, 2008 4 Openness is About More than Just Journal Articles Through communication and integration comes comprehension and dissemination catalyzed by the Internet

5 JournalsDOIsKnowledge The Open Matrix Providers Cyberspace ID Content

6 PeopleOpenID/ ResearcherID Profile/ Personality SoftwareNot Well Identified SorceForge etc.. DatabasesDatabase Identifier Raw Data/ Metadata/Ontologies WebNot Well Identified Wiki, blog, video.. postings JournalsDOIsKnowledge The Open Matrix Providers Cyberspace ID Content

7 PeopleOpenID/ ResearcherID Profile/ Personality SoftwareNot Well Identified SourceForge etc.. DatabasesDatabase Identifier Raw Data/ Metadata/Ontologies WebNot Well Identified Wiki, blog, video.. postings JournalsDOIsKnowledge The Open Matrix Providers Cyberspace ID Content

8 PeopleOpenID/ ResearcherID Profile/ Personality SoftwareNot Well Identified SourceForge etc.. DatabasesDatabase Identifier Raw Data/ Metadata/Ontologies WebNot Well Identified Wiki, blog, video.. postings JournalsDOIsKnowledge The Open Matrix Providers Cyberspace ID Content

9 PeopleOpenID/ ResearcherID Profile/ Personality SoftwareNot Well Identified SourceForge etc.. DatabasesDatabase Identifier Raw Data/ Metadata/Ontologies WebNot Well Identified Wiki, blog, video.. postings JournalsDOIsKnowledge The Open Matrix Providers Cyberspace ID Content

10 PeopleOpenID/ ResearcherID Profile/ Personality SoftwareNot Well Identified SourceForge etc.. DatabasesDatabase Identifier Raw Data/ Metadata/Ontologies WebNot Well Identified Wiki, blog, video.. postings JournalsDOIsKnowledge The Open Matrix Providers Cyberspace ID Content

11 Open Access Day October 14, 2008 11 Pubcast – Video Integrated with the Full Text of the Paper

12 Open Access Day October 14, 2008 12 Open Access (Creative Commons License) 1.All published materials available on-line free to all (author pays model) 2.Unrestricted access to all published material in various formats eg XML provided attribution is given to the original author(s) 3.Copyright remains with the author

13 Open Access Day October 14, 2008 13 Professional Profile ICTP Trieste, December 2007

14 Note: Profiles Are a First Step to Virtual Research Environments Social Professional Networking Expert finding [Thanks to Carole Goble]

15 Open Access Day October 14, 2008 15 Create & Join Communities and Discussion Groups ICTP Trieste, December 2007

16 PeopleOpenID/ ResearcherID Profile/ Personality SoftwareNot Well Identified SourceForge etc.. DatabasesDatabase Identifier Raw Data/ Metadata/Ontologies WebNot Well Identified Wiki, blog, video.. postings JournalsDOIsKnowledge The Open Matrix Providers Cyberspace ID Content biolit.ucsd.edu

17 1. A link brings up figures from the paper 0. Full text of PLoS papers stored in a database 2. Clicking the paper figure retrieves data from the PDB which is analyzed 3. A composite view of journal and database content results BioLit: Tools for New Modes of Scientific Dissemination Biolit integrates biological literature and biological databases and includes: –A database of journal text –Authoring tools to facilitate database storage of journal text –Tools to make static tables and figures interactive 4. The composite view has links to pertinent blocks of literature text and back to the PDB 1. 2. 3. 4. The Knowledge and Data Cycle http://biolit.ucsd.edu

18 Semantic Enrichment http://imageweb.zoo.ox.ac.uk/pub/2008/plospaper/latest/ Courtesy David Shotton http://biolit.ucsd.edu

19 Open Access Day October 14, 2008 19 Semantic Enrichment at the Point of Authoring

20 Open Access Day October 14, 2008 20 A Knowledge Workflow of the Future ExperimentResults Publish Science 2.0 Nature Procedings

21 Open Access Day October 14, 2008 21 Motivation

22 Open Access Day October 14, 2008 22 Acknowledgements SciVee Team –Apryl Bailey –Tim Beck –Leo Chalupa –Marc Friedman –Alex Ramos –Willy Suwanto BioLit Team J. Lynn Fink Marco Martinez Sergey Kushch Greg Quinn Vianca Ramirez Parker Williams CT Watch 2007, 3(3) 26-31

23 Open Access Day October 14, 2008 23 Questions? pbourne@ucsd.edu

Download ppt "The Promise of Open Access Philip E. Bourne PhD University of California San Diego Open Access Day October 14, 2008"

Similar presentations

Www.plos.org Committed to making the worlds scientific and medical literature a public resource.

Committed to making the worlds scientific and medical literature a public resource.
Scary, interesting, fun, creative, Exciting!. 1995 Community & Information Portal for Engineers.

Scary, interesting, fun, creative, Exciting! Community & Information Portal for Engineers.
OPEN ACCESS INITIATIVE IN ONE OF THE PALESTINIAN UNIVERSITIES: BIRZEIT UNIVERSITY Prepared by Mrs. Diana Sayej-Naser Library Director Birzeit University.

" OPEN ACCESS INITIATIVE IN ONE OF THE PALESTINIAN UNIVERSITIES: BIRZEIT UNIVERSITY" Prepared by Mrs. Diana Sayej-Naser Library Director Birzeit University.
How to write my paper and have it published in a computational biology journal? Phil Bourne University of California San Diego

How to write my paper and have it published in a computational biology journal? Phil Bourne University of California San Diego
The go-to place for all our Extensive Reading needs

The go-to place for all our Extensive Reading needs
Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT.

Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT.
Open Access, Research Funders and the Research Excellence Framework Open Access Team, Library.

Open Access, Research Funders and the Research Excellence Framework Open Access Team, Library.
Www.plos.org UCL: June 18, 2008 “Open access publishing” Mark Patterson, Director of Publishing Committed to making the world’s scientific and medical.

UCL: June 18, 2008 “Open access publishing” Mark Patterson, Director of Publishing Committed to making the world’s scientific and medical.
The Evolving World of Medical Journals Taking CVIR into the Future William F. Curtis, Ph.D. Executive Vice President.

The Evolving World of Medical Journals Taking CVIR into the Future William F. Curtis, Ph.D. Executive Vice President.
Making small data big! The Biodiversity Data Journal (BDJ) Lyubomir Penev, Teodor Georgiev, Pavel Stoev, David Roberts, Vincent Smith ViBRANT.

Making small data big! The Biodiversity Data Journal (BDJ) Lyubomir Penev, Teodor Georgiev, Pavel Stoev, David Roberts, Vincent Smith ViBRANT.
JINR / CERN Grid and advanced information systems 2012 Anne Gentil-Beccot CERN Library GS/SIS The Library behind the scene Opportunities for Scientific.

JINR / CERN Grid and advanced information systems 2012 Anne Gentil-Beccot CERN Library GS/SIS The Library behind the scene Opportunities for Scientific.
The Library behind the scene How does it work ? The Library behind the scenes 1 JINR / CERN Grid and advanced information systems 2012 Anne Gentil-Beccot.

The Library behind the scene How does it work ? The Library behind the scenes 1 JINR / CERN Grid and advanced information systems 2012 Anne Gentil-Beccot.
NATIONAL LIBRARY OF MEDICINE PubMed Central Brooke Dine National Library of Medicine Medical Library Association Conference May 2004.

NATIONAL LIBRARY OF MEDICINE PubMed Central Brooke Dine National Library of Medicine Medical Library Association Conference May 2004.
Journals Full Text Resources Including MedIND. For Scholarly Information We start with Bibliographic Databases having references to journals and other.

Journals Full Text Resources Including MedIND. For Scholarly Information We start with Bibliographic Databases having references to journals and other.
Figures for ADMIRAL Project grant application These figures are copyright © David Shotton, University of Oxford, 2009. They are made available for reuse.

Figures for ADMIRAL Project grant application These figures are copyright © David Shotton, University of Oxford, They are made available for reuse.
Scholarly information – past, present and future Siân Harris Editor, Research Information

Scholarly information – past, present and future Siân Harris Editor, Research Information
NATIONAL LIBRARY OF MEDICINE The PubMed ID and Entrez, PubMed and PubMed Central Edwin Sequeira National Center for Biotechnology Information June 21,

NATIONAL LIBRARY OF MEDICINE The PubMed ID and Entrez, PubMed and PubMed Central Edwin Sequeira National Center for Biotechnology Information June 21,
New Modes of Scholarly Communication and Learning Philip E. Bourne University of California San Diego 1WSU December 2, 2008.

New Modes of Scholarly Communication and Learning Philip E. Bourne University of California San Diego 1WSU December 2, 2008.
Computing ESSENTIALS     CHAPTER Ch 9Copyright 2003 The McGraw-Hill Companies, Inc. 1 1010 Graphics, Multimedia, and Artificial Intelligence computing.

Computing ESSENTIALS     CHAPTER Ch 9Copyright 2003 The McGraw-Hill Companies, Inc Graphics, Multimedia, and Artificial Intelligence computing.
OMICS Group Contact us at: OMICS Group International through its Open Access Initiative is committed to make genuine and.

OMICS Group Contact us at: OMICS Group International through its Open Access Initiative is committed to make genuine and.

Similar presentations

Ads by Google