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The LEDA Traitbase a database on life-history plant traits Irma Knevel 1,2 Renée Bekker 2 Presented by Ingolf Kühn 3 EVR1-CT-2002- 40022 LEDA 1 Landscape Ecology Group, University of Oldenburg (DE) 2 Community and Conservation Ecology Group, University of Groningen (NL) 3 Department of Community Ecology - Centre for Environmental Research Leipzig-Halle (UFZ) (DE) - Leda and the swan -
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Why a life-history database of plant traits? user Fact Changing land use, pollution, eutrophication, fragmentation Essential Understand and predict the consequences Problem Information scattered and unavailable Solution LEDA TRAITBASE Environmental agencies - Land use managers - Policy makers - Researchers
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LEDA Traitbase species-trait matrix for ~ 3000 species with each record referenced based on firm data standards and protocols designed as a web-based database that operates with a user-friendly interface where users will be able to download (selected) traits What is the LEDA Traitbase? Online ecological data and information management: Ecoinformatics
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Area selected: NW Europe
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1. To predict plant biodiversity and plant mobility in a changing landscape 2. To pool trans-national expertise on:Functional significance of traits Trait classification Trait measurement Planning Restoration & conservation Applied research tool Objectives: Brook restoration Drentse Aa (NL) What can you expect of the LEDA Traitbase?
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LEDA Traitbase construction Species-trait matrix: ~ 3000 NW European species >20 traits of key features persistence, regeneration & dispersability Filling of the matrix: Collation of existing databases Literature compilation Unpublished data BiolFlor Seed bank database Additional measurements Firm protocols & standards Deduction Extensive measurements of simple morphological traits (Thompson et al. 1997, validation e.g. Funes et al. 1999) E.g. Seed persistence predicted from seed size and shape Gaps:
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canopy height plant growth form (Raunkiaer) leaf distribution (along the stem) clonal growth organs (CGO) persistence mother-daughter connection leaf mass leaf size specific leaf area (SLA) tissue density shoot growth form lateral spread/year 1. Persistence plant life span age of first flowering seed number per shoot seed shape seed weight seed size seed longevity (soil seed bank) 2. Regeneration LEDA traits: Persistence & Regeneration
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morphology of dispersal unit (anemochory) releasing height terminal velocity attachment capacity dispersal unit (epizoochory) survival capacity of digestive tract (endozoochory) buoyancy (hydrochory) 3. Dispersability LEDA traits: Dispersability
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Traitbase construction: Data flow chart
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Traitbase: Architectural overview & principles Relational schema: About 150 tables Database Management System: Oracle 9i Web application container: Apache Tomcat 4.1/5.0 Extensibility: Addition of traits does not require major changes Openness: Arbitrary SQL queries in addition to standard queries Reproducibility: Results of online-queries are citable due to versioning Web Application Container Web Application Container Web Query Interface Web Data Input Web Reporting Tool Web Tool for Data-Mining Database System Data Importing Tools
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Example: Online input form
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LEDA Traitbase: Status April 2004 Persistence Regeneration Dispersability Average data available = 42% x = data collection finished
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and visit www.leda-traitbase.org for more information - PLEASE CONTRIBUTE YOUR DATA - Call for help Freely accessible and available November 2005 Thank you for your attention !
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Landscape Ecology Group - Carl von Ossietzky University of Oldenburg (DE) Laboratory of Plant Ecology - University of Groningen (NL) Aquatic Ecology and Environmental Biology - University of Nijmegen (NL) OFFIS Oldenburg/Computer Science - Carl von Ossietzky University of Oldenburg (DE) Institute of Botany - University of Regensburg (DE) Department of Animal and Plant Sciences - University of Sheffield (UK) Department of Plant Ecology - Institute of Botany (CZ) Department of Community Ecology - Centre for Environmental Research Leipzig-Halle (DE) Norwegian Institute for Nature Research (NO) Laboratory of Forest, Nature & Landscape Research - University of Leuven (BE) The LEDA Traitbase project is funded through the 5 th framework of the EC under the Energy, Environment, and Sustainable Development programme (EESD). Acknowledgements Photo’s by University of Groningen except: Bishops museum (http://aliens.bishopmuseum.org) - T. Teearu - M. Mouissie (RUG) - Hunze Aa (http://www. hunzeenaas.nl) - Offwell Woodland & Wildlife Trust (http://www.offwell.free-online.co.uk) - J. Smalley (http://www.lbap.org.uk/HTML /habitat/ CGrass.htm) - University of Regensburg LEDA Traitbase partners:
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