1. Ohio Supercomputer Center Cluster Computing Overview Summer Institute for Advanced Computing August 22, 2000 Doug Johnson, OSC

2. Ohio Supercomputer Center Cluster Computing Overview 2 Overview  What is Cluster Computing  Why Cluster Computing  How Clusters Fit with OSC Mission  When Did It All Start  OSC 128 Processor SGI/Linux Cluster  Clusters for Production HPC Environments

3. Ohio Supercomputer Center Cluster Computing Overview 3 What is Cluster Computing? A Cluster is a collection of interconnected whole computers used as a single, unified computer Cluster Computing is many things...  High performance computing  Run programs with parallel algorithms  High throughput computing  Parametric studies (same program run many times with different parameters)  High availability computing  Fail-over redundancy Both scientific and commercial applications! Common Resources CPU(s) Memory Hard Drive Network Card NETWORKNETWORK

4. Ohio Supercomputer Center Cluster Computing Overview 4 Brief History of Cluster Computing at OSC Beowulf project at Center of Excellence in Space Data and Information Sciences (CESDIS) installs 1st cluster - 16 Intel 486 DX4 processors @ 100MHz, 16 Mbytes RAM per processor, 10 Mbit Ethernet interconnect (3per node) OSC installs “Beaker” systems, a dual purpose workstation cluster - 12 DEC Alpha EV4 processors with Full Duplex FDDI interconnect OSC installs “Trout” system, dual purpose workstation cluster, 14 SGI O2 workstations, R10000 processors @ 150 MHz, ATM interconnect OSC 10 processor IA32 Linux Cluster, Pentium II-400MHz processors,Myrinet interconnect, 4.5 Gbyte RAM OSC SGI/Linux 128 Processor Cluster, Pentium III Xeon 550MHz processors, 66 Gbyte RAM, Myrinet and 100Mbit Ethernet interconnect

5. Ohio Supercomputer Center Cluster Computing Overview 5 Why Parallel Computing  Parallel computing is a strong presence at the National level and is the future of High Performance Computing(HPC)  Parallel computing platforms are a vital element in our infrastructure  Parallel systems have traditionally not been an accessible resource, compared to single processor systems  Higher cost (due mostly to high performance interconnect)  Less refined user interface  Non-traditional programming techniques with little training available OSC Mission Statement OSC provides a reliable high performance computing and communications infrastructure for a diverse, statewide/regional community including education, academic research, industry, and state government. …

6. Ohio Supercomputer Center Cluster Computing Overview 6 Why Cluster Computing OSC evaluates new and emerging information technologies  Cluster computing is one of the hottest fields in high performance computing Potential benefits of clusters over traditional parallel systems  High performance interconnect technology is approaching commodity availability  Performance of commodity systems are increasing at an aggressive rate due to the commercial market of home/office workstations OSC Mission Statement... In collaboration with this community, OSC evaluates, implements, and supports new and emerging information technologies....

7. Ohio Supercomputer Center Cluster Computing Overview 7 Why Cluster Computing Potential benefits of clusters over traditional parallel systems (cont)  Operating system gives users the same environment on their desk that they have on the parallel system Other differences  System administration implications  No single system image - OS and software upgrades must be applied to all nodes  Cluster design lends itself to more frequent hardware upgrades  Performance implications  Accounting/funding implications

8. Ohio Supercomputer Center Cluster Computing Overview 8 How Clusters Fit With OSC Mission  OSC evaluates new and emerging information technologies  Multiple software packages have been evaluated to provide the most robust system  Four different network interconnects have been installed to evaluate performance  Three different processors and operating systems were investigated  OSC implements new and emerging information technologies  A cluster under OSC administration has been available to users since March, 1999  OSC Partnered with Portland Group to bring Cluster Development Kit to OSC users  OSC supports new and emerging information technologies  OSC 128 processor cluster in production status  Training classes on how to build and use a cluster  Staff available to Ohio faculty to help answer questions and trouble shoot problems OSC Mission Statement... In collaboration with this community, OSC evaluates, implements, and supports new and emerging information technologies....

9. Ohio Supercomputer Center Cluster Computing Overview 9 To Summarize  Develop cluster technology so that it can be rolled out to university research labs  Provide a hardware and software configuration that will allow labs to construct a working cluster with minimal effort  Experienced OSC staff can provide technical assistance  Evaluate software and hardware configurations to assist researchers in defining a system that will best suit their needs  Let the researchers focus on science  Based on user applications, provide performance analysis showing the optimal hardware and software configuration  OSC wants to encourage parallel programming  Parallel programming is the future of high performance computing  Clusters provide increased access to parallel systems

10. Ohio Supercomputer Center Cluster Computing Overview 10 When Did It All Start? December, 1998 OSC management authorizes a dedicated 10 processor cluster for technology evaluation 1 - Front end node 2 Intel Pentium II 400MHz processors 512 Mbyte RAM, 18 Gbyte Disk 4 - Compute nodes 2 Intel Pentium II 400MHz processors 1 Gbyte RAM,9 Gbyte disk Interconnects: 100mbit Ethernet, Dolphinics SCI, Myricom Myrinet Linux OS, PBS Batch System, PGI Compiler Suite April, 1999 Performance evaluation yields promising results and machine is opened to users in April, 1999

11. Ohio Supercomputer Center Cluster Computing Overview 11 OSC/SGI Cluster September, 1999 Agreement signed between OSC and SGI October, 1999 System powered on November, 1999 Machine configured and running applications on floor of Supercomputing 99 December, 1999 Machine installed at OSC February, 2000 Machine opened to friendly users

12. Ohio Supercomputer Center Cluster Computing Overview 12 Hardware  1 front-end node configured with:  Two Gigabytes of RAM  Four 550 MHz Intel Pentium III Xeon processors, each with 512kB of secondary cache  48 Gigabytes, ultra-wide SCSI hard drives  Two 100Base-T Ethernet interfaces  One HIPPI interface  32 compute nodes each configured with:  Two Gigabytes of RAM  Four 550 MHz Intel Pentium III Xeon processors, each with 512kB of secondary cache  18 Gigabytes, ultra-wide SCSI hard drives  Two Myrinet interfaces  One 100Base-T Ethernet interface All nodes are SGI 1400L servers

13. Ohio Supercomputer Center Cluster Computing Overview 13 Software and Configuration  Hardware originally assembled in Mountainview, CA by SGI Professional Services  OS and software environment installed and configured by OSC staff  Linux operating system  Portable Batch System (PBS)  Portland Group Compiler Suite  Myrinet MPICH-GM interface

14. Ohio Supercomputer Center Cluster Computing Overview 14 Clusters for Production HPC Environment There are two significant efforts with building clusters  Building a cluster and making it operational  Making the cluster a production system  Ability to host multiple users simultaneously  Ability to schedule system resources  Ability to function without constant intervention The OSC cluster has the following attributes that make it a true HPC production system  Connection to a Mass Storage System (MSS)  Integrated into OSC account database system  Job accounting  Good utilization  High availability

15. Ohio Supercomputer Center Cluster Computing Overview 15 Mass Storage Support HIPPI 100 Mbit (private) 100 Mbit Switch DMF Origin 2000 1 Terabyte disk storage Data Migration Facility (DMF) IBM 3494 30 Terabyte tape storage..

16. Ohio Supercomputer Center Cluster Computing Overview 16 User Accounts and Accounting  User Accounts  Cluster is integrated into the Center’s database system for automatic account generation and maintenance  Job Accounting  Accounting has been configured into the environment which tracks CPU usage of users  CPU usage is converted with a charging algorithm and deducted from a Principal Investigators account  Users can view accounting history with text command from Linux command prompt

17. Ohio Supercomputer Center Cluster Computing Overview 17 Utilization and Availability  Utilization  System utilization is recorded and accessible via a web link  For parallel systems, utilization is expected to be around 50 to 70%  Current utilization is about 70% parallel and 30% serial  Availability  Good availability has been achieved through significant uptime and minimal system problems  Scheduling downtime every 4 weeks for software upgrades, hardware modifications and general system maintenance

18. Ohio Supercomputer Center Cluster Computing Overview 18 TCP Stream Performance

19. Ohio Supercomputer Center Cluster Computing Overview 19 TCP Stream Performance

20. Ohio Supercomputer Center Cluster Computing Overview 20 UDP Stream Performance./netperf -l 60 -H fe.ovl.osc.edu -i 10,2 -I 99,10 -t UDP_STREAM -- -m 1472 -s 32768 -S 32768 UDP UNIDIRECTIONAL SEND TEST to fe.ovl.osc.edu : +/-5.0% @ 99% conf. Socket Message Elapsed Messages Size Size Time Okay Errors Throughput bytes bytes secs # # 10^6bits/sec 131070 1472 59.99 3229909 0 634.03 524288 59.99 2169706 425.91