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ZeroG and Sticky Nano Property #1&2:
All things stick to each other at the nanoscale. Gravity can be completely ignored Forget Gravity. Objects tend to stick Objects don’t fall. No gravity
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Why no Gravity?? All objects in the universe are subject to gravitational force The Gravitational force is proportional to mass. The masses of atoms,molecules and other nano objects are vanishingly small.
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An individual water molecule weighs
18 amu or 18 g/mol. 18 g/mol / (6*1023 atoms/mol) = 3 * g Or 7* pounds lbs. This weight is billions of times lower than the other forces acting on the water molecule. Why no Gravity?? H20 Weight = 3*10-22 N Van der Waals Forces : – N Covalent Bonds: ~10-9 N Gravitational Force Between two carbon atoms ~10-42N
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Why no Gravity?? An individual water molecule weighs
18 amu or 18 g/mol. What is this weight in grams? In pounds ?
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Gr. weak, Stickiness Strong
Forces between atoms and molecules dominate. Electrostatic and “Steric” in origin.
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_ + + + _ + Electrostatic Forces Opposite Charges Attract
Electric Charges: Positive and Negative + + _ Opposite Charges Attract Like Charges Repel. +
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Atoms Bohr Model Electrons electrical charge= -e
Protons electrical charge= +e Neutrons Bohr Model
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Its Very Sticky down there
How sticky is it? Our intuition based on our macroscopic world fails us here. In general objects don’t stick in our daily lives. Its Very Sticky down there
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Stickiness = Bonding Chemical and Physical Many types of bonding
Two main categories: Chemical and Physical Chemical Bonds are very strong (intra-molecular) Physical Bonds are much weaker (inter-molecular)
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Chemical Bonds “Molecule” A group of atoms connected by chemical bonds
Atoms interact chemically to form molecules “Molecule” A group of atoms connected by chemical bonds Atom 2 Atom 1 They share / trade electrons Molecule
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Chemical Bonds Water Carbon nanotubes Gold nanocluster Protein
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Chemical Bonds Covalent Bonds Ionic Bonds Metallic Bonds
Different Types of Chemical Bonds Covalent Bonds Ionic Bonds Metallic Bonds
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Chemical Bonds 1: Covalent Bonds
Atoms SHARE electrons strc.herts.ac.uk/bio/markr/ biology/day1.htm
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Electronic Orbitals: The wave mechanical model of atoms
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S-Orbital D-Orbital F-Orbital P-Orbital
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S-Orbital P-Orbital D-Orbital F-Orbital
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Chemical Bonds 2: Ionic Bonds
Atoms TRADE electrons
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Ionic Bonds Atoms TRADE electrons WEAK in WATER
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Chemical Bonds 3: Metallic Bonds
Atoms DONATE MOBILE electrons electron Atom
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Physical or Intermolecular Bonds
Interactions between molecules Molecules interact but remain independent. No “sharing” of electrons.
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Physical Bonds Van der Waals Hydrogen Bonds Hydrophobic Interactions
Different Types of Physical Bonds Van der Waals Hydrogen Bonds Hydrophobic Interactions
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Physical Bonds are Electrostatic in origin
Nano Object Neutral Charge: equal positive and negative charge An object of neutral charge can be polarized. - +
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Van der Waals forces : Polarizability 1
Polarized Object Polarized Object Dipole- Dipole interaction. Attractive. Sticky
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Van der Waals forces : Polarizability 2
Polarized Object Polarizable Object Dipole-Induced Dipole Interaction Attractive. Sticky.
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Van der Waals forces : Polarizability 3
Polarizable Object Polarizable Object Induced Dipole- Induced Dipole Interaction. Attractive. Sticky.
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Van der Waals Bonding dipole - dipole dipole - induced dipole
Different Types of Physical Bonds dipole - dipole dipole - induced dipole induced dipole – induced dipole
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Hydrogen Bonding + _ Water Hydrogens have a slight positive charge H O
Oxygen has a slight negative charge
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Hydrogen Bonding O H _ + O H _ + O H _ + Hydrogen Bond
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Hydrogen Bonding: DNA Base Pairing
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Hydrophobic Bonding
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Micelles/Detergents/Fatty Acids
Hydrophillic water Hydrophobic water water water water water
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Micelles/Detergents/Fatty Acids
water water water water water
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Micelles/Detergents/Fatty Acids
water water water water water
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Micelles/Detergents/Fatty Acids
Hydrophillic water Hydrophobic water water oil water water water
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Micelles/Detergents/Fatty Acids
water water water oil water water
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Bond Energies How strong are these bonds force-wise?
Bond Energies kJ/mol* eV/bond E/kBT Covalent/Ionic Bonds Van der Waals Bonds ~ Hydrogen Bonds Hydrophobic Bonds ~ Avidin Biotin ~ * 1kJ/mol = 0.24 kcal/mol How strong are these bonds force-wise? It depends but roughly speaking… Covalent ~ 1000pN Non-Covalent pN
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x Potential Energy x Eb
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Bond Energies How strong are these bonds force-wise?
Bond Energies kJ/mol* eV/bond E/kBT Covalent/Ionic Bonds Van der Waals Bonds ~ Hydrogen Bonds Hydrophobic Bonds ~ Avidin Biotin ~ * 1kJ/mol = 0.24 kcal/mol How strong are these bonds force-wise? It depends but roughly speaking… Covalent ~ 1000pN Non-Covalent pN
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An individual water molecule weighs
18 amu or 18 g/mol. 18 g/mol / (6*1023 atoms/mol) = 3 * g Or 7* pounds lbs. This weight is a hundred trillion times smaller than the bond force of an individual hydrogen bond. Why no Gravity?? H20 Weight = 3*10-25 N Van der Waals Forces : – N Covalent Bonds: ~10-9 N
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How does bond energy relate to the rupture force of a bond?
x Potential Energy x Eb It Depends . . .
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x Eb Effects of thermal energy on Bond Strength
Thermal Energy affects the Dissociation Constant and Bond Strength. Thermal Energy aids the dissociation of a bond. Potential Energy x Eb kBT
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Bond Strength: Boltzman Factor
What is the probability that a bond will spontaneously dissociate???? kT at room temperature = meV P=e-Eb/kT The rate of dissociation rd = w e-Eb/kBT Rate of dissociation Attempt frequency Vibrational frequency of bond or inverse relaxation time Probability per attempt
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