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Metagenomics Rob Edwards MCS. The Soudan Mine, Minnesota Red Stuff Oxidized Black Stuff Reduced.

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Presentation on theme: "Metagenomics Rob Edwards MCS. The Soudan Mine, Minnesota Red Stuff Oxidized Black Stuff Reduced."— Presentation transcript:

1 Metagenomics Rob Edwards MCS

2 The Soudan Mine, Minnesota Red Stuff Oxidized Black Stuff Reduced

3 Red and Black Samples Are Different Cloned and 454 sequenced 16S are indistinguishable Black stuff Red Cloned Red

4 There are different amounts of substrates in each environment Black Stuff Red Stuff

5 There are different amounts of metabolism in each environment

6 Nitrification differentiates the samples Edwards (2006)

7 The SEED metagenomics server

8 Metabolic potential in environments

9 Phylogenomics

10 Comparing Metagenomes to Genomes (or other metagenomes!)

11 Lots of sequences all pyrosequencing

12 Metabolic potential in environments

13 Sulfur CDA 60.2% CDA 21.7% Respiration Capsule Motility Membrane transport Stress Signaling Phosphorus RNA Mine Saltern Marine Microbialites Coral Fish Animals Freshwater From sequences to environments Dinsdale et al. unpublished


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