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Published byStanley Sanders Modified over 9 years ago
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Preparing undergraduates to succeed in college and beyond in a bioinformatics-rich curriculum Discussion of existing resources, opportunities, and challenges Relevant issues identified in the pre-conference survey include: How do we encourage math-averse students to embrace quantitative and computational analysis? How much knowledge and expertise in computer science and mathematics do life science majors need?
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William Morgan, Sofia Visa The College of Wooster
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Provide undergraduates in computer science OR biology with an interdisciplinary experience to: Develop a bioinformatics conceptual framework Learn to use essential bioinformatics tools Develop programming skills Explore questions in bioinformatics Acquire skills and confidence to work on an interdisciplinary team
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Segment 1: Develop a shared knowledge base “Essentials” mini-courses Segment 2: Explore & apply bioinformatics tools, working collaboratively Topics in computational genomics Genome Annotation; Genome Evolution; Gene Expression Weekly structure Genomics / Programming / Case Study
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Goal: Predict host-targeted proteins encoded in a pathogen genome 1. Translate ORFs of a Phytophthora genome into protein sequences 2. Based on N-terminal signal peptide, identify putative secreted proteins 3. Based on RXLR domain, identify putative host cell-targeted proteins
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Textbooks The Cartoon Guide to Genetics (Updated ed.) Python for Bioinformatics Introduction to Computational Genomics: A Case Studies Approach
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Department & institutional buy-in Coordinating instructor activities Weekly course structure Balancing course content Student enrollment levels Fostering student collaboration
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