Presentation on theme: "Mitochondrial and Chloroplast DNA in Scaffolds. Goal Determine which scaffolds have mitochondrial or chloroplast DNA – Grape and Arabidopsis reference."— Presentation transcript:
What Next? Possible additional feature is to pull out scaffolding sequences that give x hits Annotation issues with geneious
What we can do in Geneious Scaffolds identified through blast and counting hits re-Blasted as queries against grape and Arabidopsis mitochondria DNA – Just took one of the scaffolds with the most hits and re-blasted Some alignment with ORFs
1 scaffold against all mitochondrial genes for grape and Arabidopsis Notice 14 total hits… Different e-value? Program wrong?