1. Tdu Tpo Synthetic F1 hybirds Tdu Tpo Synthetic F1 hybirds BIOTIN SYNTHASE Tdu Tpo Synthetic F1 hybirds Tdu Tpo Synthetic F1 hybirds THIOREDOXIN M-TYPE 1 Tdu Tpo Synthetic F1 hybirds Tdu Tpo Synthetic F1 hybirds Small GTP- Binding protein Tdu Tpo Synthetic F1 hybirds Tdu Tpo Synthetic F1 hybirds Genomic CAPScDNA CAPS Additional file 4. Genomic and cDNA CAPS analyses for 15 candidate genes from Tragopogon F 1 hybrids and their porgenitors. Tdu=T. dubius (2611-11, Pullman, WA), Tpo=T. porrifolius (2613-24, Pullman, WA). CRYPTOCHROME 1 MYOSIN HEAVY CHAIN CLASS XI Tdu Tpo Synthetic F1 hybirds Tdu Tpo Synthetic F1 hybirds

2. PEROXIDASE FRUCTOSE- BIPHOSPHATE ALDOLASE Tdu Tpo Synthetic F1 hybirds Tdu Tpo Synthetic F1 hybirds Tdu Tpo Synthetic F1 hybirds Tdu Tpo Synthetic F1 hybirds Tdu Tpo Synthetic F1 hybirds Tdu Tpo Synthetic F1 hybirds GIBBERELLIN RESPONSE MODULATOR NUCLEAR RIBOSOMAL DNA Tdu Tpo Synthetic F1 hybirds Tdu Tpo Synthetic F1 hybirds Tdu Tpo Synthetic F1 hybirds Tdu Tpo Synthetic F1 hybirds Additional file 4. (Continued) Genomic CAPScDNA CAPS TRANSDUCIN FAMILY PROTEIN

3. GLYCERALDEHYDE-3- PHOSPHATE DEHYDROGENASE Tdu Tpo Synthetic F1 hybirds Tdu Tpo Synthetic F1 hybirds Genomic CAPScDNA CAPS Additional file 4. (Continued) GLYCOSYL- TRANSFERASE FAMILY 4 EXPRESSION PROTEIN 1 FAR-RED IMPAIRED RESPONSE PROTEIN CONSERVED HYPOTHETIAL PROTEIN Tdu Tpo Synthetic F1 hybirds Tdu Tpo Synthetic F1 hybirds Tdu Tpo Synthetic F1 hybirds Tdu Tpo Synthetic F1 hybirds Tdu Tpo Synthetic F1 hybirds Tdu Tpo Synthetic F1 hybirds Tdu Tpo Synthetic F1 hybirds Tdu Tpo Synthetic F1 hybirds