Presentation is loading. Please wait.

Presentation is loading. Please wait.

Visually Comparing Hi-C Networks: Demo Presentation CytoHiC in 10 Steps

Similar presentations


Presentation on theme: "Visually Comparing Hi-C Networks: Demo Presentation CytoHiC in 10 Steps"— Presentation transcript:

1 Visually Comparing Hi-C Networks: Demo Presentation CytoHiC in 10 Steps

2 1. Download CytoHiC Plugin*: toHiC/CytoHiCPlugin.jar toHiC/CytoHiCPlugin.jar * Make sure you have Cytoscape (or later version) installed on your computer

3 2. Place it in Cytoscape’s plugins directory

4 3. Launch Cytoscape: CytoHiC menu will appear under the Plugins menu

5 4. Open the View Dialog

6 5. Upload a bin file, a contact file and a landmarks file* Example files are available at: The genomic location of each segment (bin) Contact values between bins The genomic location of landmarks of interest

7 *Example Files

8 6. Click OK: a network will be generated

9 7. Explore the network by hovering or through the node/edge browser

10 8. Use the right click menu or the CytoHiC menu to compare networks

11 9. Compare Hi-C networks a. Use indices to compare landmarks b. Use hovering and browsers to view landmarks details

12 10. Learn more with CytoHiC’s user guide


Download ppt "Visually Comparing Hi-C Networks: Demo Presentation CytoHiC in 10 Steps"

Similar presentations


Ads by Google