1. Interactive analysis of lists …on the web Raymond Ripp 19 février 2013

2. Data and Tools  GxDb  ImAnno  Gscope  GO  SM2PH  EvoluCode  …  /biolo/…  PHP programs PipeWork DoOnlist HtmlTable RadarGenerator StringInteractome GoGet CytoscapeWeb DecoreTree

3. Example 1 : a PipeWork to Combine Lists of Genes  How to combine lists of genes from ImAnno sieves (search tool using SQL queries) Transcriptomic Expression (GxDb Web Service) Diseases related genes (from previously stored lists)  With Union, Intersection, AnotB, …

4. sieves Cochlea Sacculus Utriculus url Select Store cochlea sacculus utriculus other Select Disease Jax Ihr Sanger All ISH Annotation Intersection GenePaintGenes Information Intersection Transcriptomic Diseases … more details

5. Output cadre sieves Cochlea Sacculus Utriculus url action Union Inter AnotB BnotA organ key action Union Inter AnotB BnotA Select Store EGEcoch EGEsac EGEutri EGEother action Union Inter AnotB BnotA Select Disease Jax Ihr Sanger All What to display name,descript,entrez,ege,go FromSieves UnionInter AnotBnotA GenePaintgenes UnionInter AnotBnotA HtmlTable FromStore

7. ImAnno Gene List

8. HtmlTable as output of the PipeWork

9. PipeWork … merci à  Laetitia Poidevin  Nicolas Gagnière  Guillaume Berthommier

10. Example2 : PipeWork ClusterComposition

11. HtmlTable

12. From an HtmlTable to DoOnList

13. DoOnList

14. DoOnList Help

15. From DoOnList to RadarGenerator

16. RadarGenerator

17. From DoOnList to GO

19. From DoOnList to StringInteractome

20. organism=Mus_musculus … don’t forget to specify the organism

21. StringInteractome Summary

24. From DoOnList to EvoluCode

27. DoOnList Help

28. From ImAnno to Itol From Itol to DecoreTree

32. http://lbgi.fr/fed

33. Paste your gene list to StringInteractome

35. Conclusion … and To Do  It works …  The user can start with his own lists  The analysis tools create new lists  It allows to combine different web sites and systems  The user can store, restore and download his data  Test it on real cases We have to :  Organize user’s data  Allow multi sessions  Add new functionalities  Use it intensively. merci.