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Next Generation Sequencing - Visualization - Arif Hossain Kyung Min Su.

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Presentation on theme: "Next Generation Sequencing - Visualization - Arif Hossain Kyung Min Su."— Presentation transcript:

1 Next Generation Sequencing - Visualization - Arif Hossain Kyung Min Su

2 Content  Visualization Issues  NGSView  Tablet

3 Visualization Issues  Huge Data  Various Format  Rendering and Navigation  Extensibility

4 NGSView  Berkeley DB engine  Front end converter  XML format  Open and Documented API  http://ngsview.sourceforge.net http://ngsview.sourceforge.net

5 NGSView

6

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8 Tablet  High-performance visualization and data navigation.  Display of reads in both packed and stacked formats.  Paired end visualization support.  File format support for ACE, AFG, MAQ, SOAP2, SAM and BAM.  Search and locate reads by name across entire data sets.  Support for Windows, Apple Mac OS X, Linux and Solaris, in 32 and 64-bit.

9 Tablet

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12 Question?  NGSView  http://ngsview.sourceforge.net http://ngsview.sourceforge.net  Tablet  http://bioinf.scri.ac.uk/tablet http://bioinf.scri.ac.uk/tablet


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