Presentation is loading. Please wait.

Presentation is loading. Please wait.

What’s New for Jmol Bob Hanson St. Olaf College, Northfield, MN 20 th Biennial Conference on Chemical Education Indiana.

Published byMarsha Hawkins Modified over 8 years ago

Similar presentations

Presentation on theme: "What’s New for Jmol Bob Hanson St. Olaf College, Northfield, MN 20 th Biennial Conference on Chemical Education Indiana."— Presentation transcript:

1 What’s New for Jmol Bob Hanson St. Olaf College, Northfield, MN http://www.stolaf.edu/people/hansonr 20 th Biennial Conference on Chemical Education Indiana University July 28, 2008

2 File Reading Quality Scripting Objects Structure Modification Analysis

3 File Reading - Quality - Scripting Zap Crystallographic Symmetry Anisotropic Temp. Factors Trajectory Filter Biomolecules Objects - Structure Modification - Analysis

4 File Reading - Quality - Scripting Zap Crystallographic Symmetry Anisotropic Temp. Factors Trajectory Filter Biomolecules Objects - Structure Modification - Analysis

5 File Reading - Quality - Scripting Hermite Level Sheet Smoothing Antialiasing Calculate Aromatic Font Scaling POVRAY Translucency User-Defined Color Schemes Objects - Structure Modification - Analysis

6 File Reading - Quality - Scripting Hermite Level Sheet Smoothing Antialiasing Calculate Aromatic Font Scaling POVRAY Translucency User-Defined Color Schemes Objects - Structure Modification - Analysis

7 File Reading - Quality - Scripting Atom Expressions Display/Hide Background Mode Internal Rotation Script Queuing User-Defined Functions Navigate Mode Objects - Structure Modification - Analysis

8 File Reading - Quality - Scripting Atom Expressions Display/Hide Background Mode Internal Rotation Script Queuing User-Defined Functions Navigate Mode Objects - Structure Modification - Analysis

9 File Reading - Quality - Scripting Atom Expressions Display/Hide Background Mode Internal Rotation Script Queuing User-Defined Functions Navigation Mode Objects - Structure Modification - Analysis

10 File Reading - Quality - Scripting Dipole Draw 2D/3D Echo Isosurface MEP Color Mapping Plane/Sphere/Ellipsoid FunctionXY Complex Polyhedra JVXL-Compressed Isosurfaces LCAO Cartoons Molecular Orbitals Ramachandran/Quaternions Objects - Structure Modification - Analysis

11 File Reading - Quality - Scripting Dipole Draw 2D/3D Echo Isosurface MEP Color Mapping Plane/Sphere/Ellipsoid FunctionXY Complex Polyhedra JVXL-Compressed Isosurfaces LCAO Cartoons Molecular Orbitals Ramachandran/Quaternions Objects - Structure Modification - Analysis

12 File Reading - Quality - Scripting Dipole Draw 2D/3D Echo Isosurface MEP Color Mapping Plane/Sphere/Ellipsoid FunctionXY Complex Polyhedra JVXL-Compressed Isosurfaces LCAO Cartoons Molecular Orbitals Ramachandran/Quaternions Objects - Structure Modification - Analysis

13 File Reading - Quality - Scripting Delete RotateSelected TranslateSelected Rotate/Spin Branch Load Append Minimize Objects - Structure Modification - Analysis

14 File Reading - Quality - Scripting Delete RotateSelected TranslateSelected Rotate/Spin Branch Load Append Minimize Objects - Structure Modification - Analysis

15 File Reading - Quality - Scripting Delete RotateSelected TranslateSelected Rotate Branch Load Append Minimize Objects - Structure Modification - Analysis

16 File Reading - Quality - Scripting Data GetProperty Jmol Math User-Defined Variables Complex Measuring Write/Print Objects - Structure Modification - Analysis

17

18 File Reading - Quality - Scripting Data GetProperty Jmol Math User-Defined Variables Complex Measuring Write/Print Objects - Structure Modification - Analysis

19 http://chemapps.stolaf.edu/quaternions/PISEMA/pisema.htm

20 http://Jmol.ProteinExplorer.org

21 Thank You!

Download ppt "What’s New for Jmol Bob Hanson St. Olaf College, Northfield, MN 20 th Biennial Conference on Chemical Education Indiana."

Similar presentations

Scientific & technical presentation Structure Visualization with MarvinSpace Oct 2006.

Scientific & technical presentation Structure Visualization with MarvinSpace Oct 2006.
Solutions for Cheminformatics

Solutions for Cheminformatics
Solutions for Cheminformatics Marvin features and news Akos Papp.

Solutions for Cheminformatics Marvin features and news Akos Papp.
1 Miklós Vargyas, Judit Papp May, 2005 MarvinSpace – live demo.

1 Miklós Vargyas, Judit Papp May, 2005 MarvinSpace – live demo.
CREST Workshop, 2014: Using Surfaces to Depict Contacts and Interactions Bob Hanson St. Olaf College, Northfield, MN

CREST Workshop, 2014: Using Surfaces to Depict Contacts and Interactions Bob Hanson St. Olaf College, Northfield, MN
Kinetics Explorer: an interactive web-based resource for teaching kinetics at the first-year college level Bob Hanson St. Olaf College, Northfield, MN.

Kinetics Explorer: an interactive web-based resource for teaching kinetics at the first-year college level Bob Hanson St. Olaf College, Northfield, MN.
1. 2 Blending: tells you how to specify a blending function that combines color values from a source and a destination. The final effect is that parts.

1. 2 Blending: tells you how to specify a blending function that combines color values from a source and a destination. The final effect is that parts.
Use of quaternions in biomolecular structure analysis Robert M. Hanson, Daniel Kohler, and Steven Braun Department of Chemistry, St. Olaf College Northfield,

Use of quaternions in biomolecular structure analysis Robert M. Hanson, Daniel Kohler, and Steven Braun Department of Chemistry, St. Olaf College Northfield,
Jmol virtual model kit: An entirely new way to build and explore molecular structures Robert M. Hanson Lexington Section, American Chemical Society Centre.

Jmol virtual model kit: An entirely new way to build and explore molecular structures Robert M. Hanson Lexington Section, American Chemical Society Centre.
CoolMolecules: A Molecular Structure Explorer Robert M. Hanson, Melanie Casavant, Michael McGuan.

CoolMolecules: A Molecular Structure Explorer Robert M. Hanson, Melanie Casavant, Michael McGuan.
CoolMolecules: a web-accessible database of experimentally determined molecular structures Robert M. Hanson, Melanie Casavant, and Michael McGuan St. Olaf.

CoolMolecules: a web-accessible database of experimentally determined molecular structures Robert M. Hanson, Melanie Casavant, and Michael McGuan St. Olaf.
The Jmol Voxel (VXL) File Format: Efficient Delivery of Isosurfaces Over the Web Robert M. Hanson The Problem Raw surface data files (CUBE, APBS, etc.)

The Jmol Voxel (VXL) File Format: Efficient Delivery of Isosurfaces Over the Web Robert M. Hanson The Problem Raw surface data files (CUBE, APBS, etc.)
The Challenge of Web-Based Molecular Visualization Robert M. Hanson St. Olaf College NOTE: THIS PRESENTATION REQUIRES A WINDOWS PC WITH THE LiveWeb POWERPOINT.

The Challenge of Web-Based Molecular Visualization Robert M. Hanson St. Olaf College NOTE: THIS PRESENTATION REQUIRES A WINDOWS PC WITH THE LiveWeb POWERPOINT.
Green Chemistry Using the web-based Green Chemistry Assistant to enhance understanding of chemical reactions and processes Robert M. Hanson, Paul R. Campbell,

Green Chemistry Using the web-based Green Chemistry Assistant to enhance understanding of chemical reactions and processes Robert M. Hanson, Paul R. Campbell,
Green Chemistry At the Undergraduate Level Green Chemistry in Minnesota: Opportunities and Challenges for Leadership Wednesday May 28, 2008 Humphrey Institute.

Green Chemistry At the Undergraduate Level Green Chemistry in Minnesota: Opportunities and Challenges for Leadership Wednesday May 28, 2008 Humphrey Institute.
The Challenge of Web-Based Molecular Visualization Robert M. Hanson St. Olaf College Cologne University August 21, 2006.

The Challenge of Web-Based Molecular Visualization Robert M. Hanson St. Olaf College Cologne University August 21, 2006.
Jmol and its Potential for Data Mining and Molecular Visualization in Drug Discovery Robert M. Hanson Department of Chemistry, St. Olaf College Northfield,

Jmol and its Potential for Data Mining and Molecular Visualization in Drug Discovery Robert M. Hanson Department of Chemistry, St. Olaf College Northfield,
CoolMolecules: Teaching Molecular Structure with the Cambridge Structural Database Robert M. Hanson, Melanie Casavant, and Michael McGuan St. Olaf College,

CoolMolecules: Teaching Molecular Structure with the Cambridge Structural Database Robert M. Hanson, Melanie Casavant, and Michael McGuan St. Olaf College,
Teaching Substitution and Elimination With Real-Life Examples Bob Hanson St. Olaf College, Northfield, MN 20 th Biennial.

Teaching Substitution and Elimination With Real-Life Examples Bob Hanson St. Olaf College, Northfield, MN 20 th Biennial.
Web-based methods of delivering dynamic interactive materials for teaching thermodynamics and kinetics at the first-year college level Bob Hanson St. Olaf.

Web-based methods of delivering dynamic interactive materials for teaching thermodynamics and kinetics at the first-year college level Bob Hanson St. Olaf.

Similar presentations

Ads by Google