1. ROOT I/O for SQL databases Sergey Linev, GSI, Germany

2. 13.02.2006S.Linev ROOT I/O for SQL databases2 What is SQL?  SQL – Structured Query Language  SQL is language to create, modify and retrieve data from Relational Database Management System (RDBMS)  Standard since 1986, several revisions in 1992 – SQL2, 1999 – SQL3  Supported in most commercial and open source RDBMS

3. 13.02.2006S.Linev ROOT I/O for SQL databases3 SQL support in ROOT  Abstract interface via three classes: TSQLServer – query execution TSQLResult – result of single SELECT query TSQLRow – content of single row  Implemented for MySQL, Oracle, PostgreSQL  TTreeSQL class provides TTree interface to database tables. Allow tree drawing and table modifications

4. 13.02.2006S.Linev ROOT I/O for SQL databases4 Objects store in SQL database  Write code yourself pro: probably, best performance contra: development, maintenance  Take existing SQL I/O framework pro: fast to implement contra: second I/O scheme for your classes  Convert to binary buffer and write as BLOB pro: uses ROOT I/O facility contra: no access to data without ROOT

5. 13.02.2006S.Linev ROOT I/O for SQL databases5 TFile as interface to database  Main features of TFile: Subdirectories structure and keys list Schema evolution  Pro of TFile interface to SQL database: learning – you do not need to learn using – same I/O code can be used developing – code can be tested with standard or xml file format  Contra: fixed table design performance

6. 13.02.2006S.Linev ROOT I/O for SQL databases6 How it works  New TBufferSQL2 class implemented: inherited from TBuffer class redefines all virtual methods for basic data types and objects I/O  When writing object: splits object data on parts, belonging to different class members and produces SQL INSERT queries  When reading object: generates SELECT queries and extract class member values from obtained tables subset

7. 13.02.2006S.Linev ROOT I/O for SQL databases7 Class table structure  For each class version separate table TBox_ver2, TGraph_ver4 and so on  Class members stored in separate columns: basic data types fixed-size array of basic types object, pointer on object (object id) parent class (version) special treatment for TObject and TString  Anything else will be stored in “raw” format in special table like TGraph_streamer_ver4

8. 13.02.2006S.Linev ROOT I/O for SQL databases8 TSQLFile class  Inherited from TFile  Full support of schema evolution  Beside TTree all other ROOT classes are supported  Additional configuration possible for: usage of table indexes transactions MySQL table types selection suffixes for column names

9. 13.02.2006S.Linev ROOT I/O for SQL databases9 Example with simple class class TBox: public TObject, public TAttLine, public TAttFill { Double_t fX1; Double_t fY1; Double_t fX2; Double_t fY2; ClassDef(TBox, 2); }; { TSQLFile f(“mysql://host.domain/test”, “create”,”user”,”pass”); for (int n=1;n<=10;n++) { TBox* b = new TBox(n,n*2,n*3,n*4); b->Write(Form(“box%d”,n)); } SELECT * FROM TBox_ver2TObject_ver1 Created tables: TBox_ver2 TObject_ver1 TAttLine_ver1 TAttFill_ver2 KeysTable ObjectsTable Configurations

10. 13.02.2006S.Linev ROOT I/O for SQL databases10 Common tables  Three common tables KeysTable – list of all keys in the file ObjectsTable – list of all objects id Configurations – TSQLFile config KeysTable Configurations ObjectsTable

11. 13.02.2006S.Linev ROOT I/O for SQL databases11 More complicated example { TSQLFile f(“mysql://host.domain/test”, “update”,”user”,”pass”); TGraph* gr = new TGraph(10); for (int n=0;n<10;n++) gr->SetPoint(n, n+1, (n+1)*(n+1)); gr->Write(“gr”); } TGraph_ver4 parent classes TGraph_streamer_ver4 ObjectsTable TList_streamer_ver5 NULL pointer

12. 13.02.2006S.Linev ROOT I/O for SQL databases12 Support of custom streamers  Important, while lot of ROOT and some user classes has custom streamers  Data, produced by custom streamer, directly written to _streamer_ tables like TList_streamer_ver5  Special case when custom streamer reads data, written by standard I/O  Even in custom streamer user can split data into different columns of “normal” class table

13. 13.02.2006S.Linev ROOT I/O for SQL databases13 External access to SQL tables  Easy navigation with simple SELECT statements  One raw in table corresponds to one object  Class name and version for each object can be found in ObjectsTable  TSQLFile::MakeSelectQuery() produce SELECT statement, which aggregates data of object from different tables in one

14. 13.02.2006S.Linev ROOT I/O for SQL databases14 Example with TBox class Query, produced by f->MakeSelectQuery(TBox::Class()): SELECT t1.`obj:id`, t2.UniqueId, t2.Bits, t2.ProcessId, t3.fLineColor, t3.fLineStyle, t3.fLineWidth, t4.fFillColor, t4.fFillStyle, t1.fX1, t1.fY1, t1.fX2, t1.fY2 FROM TBox_ver2 AS t1 LEFT JOIN TObject_ver1 AS t2 USING(`obj:id`) LEFT JOIN TAttLine_ver1 AS t3 USING(`obj:id`) LEFT JOIN TAttFill_ver1 AS t4 USING(`obj:id`) TObjectTAttLineTAttFillTBox

15. 13.02.2006S.Linev ROOT I/O for SQL databases15 SQL I/O performance  Two aspects: Time and CPU usage on user host Quality and number of SQL statements // TFile f(“test.root”,”recreate”); // TXMLFile f(“test.xml”,”recreate”); TSQLFile f(“mysql://host.domain/test”, “recreate”,”user”,”pass”); TClonesArray clones("TBox", 10000); for(int n=0;n<10000;n++) new (clones[n]) TBox(n+1,n+2,n+3,n+4); clones.Write("clones0", TObject::kSingleKey); gBenchmark->Start(“Write"); clones.Write("clones",TObject::kSingleKey); gBenchmark->Show(“Write"); // TFile f(“test.root”,”recreate”); // TXMLFile f(“test.xml”,”recreate”); TSQLFile f(“mysql://host.domain/test”, “read”,”user”,”pass”); TClonesArray* clon = 0, *clon0 = 0; f.GetObject("clones0", clon0); gBenchmark->Start(“Read"); f.GetObject("clones", clon); gBenchmark->Show(“Read");

16. 13.02.2006S.Linev ROOT I/O for SQL databases16 Performance measurement * MySQL 4.1 on Fedora Core 4. Pure text queries are used. With ODBC or native MySQL++ client factor 2 to 3 can be gained ** Query text length was limited to 50 KB and long queries were split *** Oracle 10g on SuSE 8. New TSQLStatement class (not yet in ROOT) was used to gain factor 25 in writing compare to standard ROOT WritingReading CPU, sReal, sQueryCPU, sReal, sQuery Binary0.03 -0.02 - XML1.21 -1.44 - MySQL*3.236.3360**2.543.056 Oracle *** 2.869.08144.314.436

17. 13.02.2006S.Linev ROOT I/O for SQL databases17 Conclusion  new TSQLFile provides new possibilities for usage of SQL database in ROOT  Tested with MySQL 4 and Oracle 10, can be adopted for other RDBMS  To be done: enhancement of ROOT TSQLServer classes new TSQLStatement class is required investigation of ODBC usage in ROOT performance optimization