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EBI is an Outstation of the European Molecular Biology Laboratory. DAS Client Libraries An easy way to create your own DAS client Leyla García UniProtTeam.

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Presentation on theme: "EBI is an Outstation of the European Molecular Biology Laboratory. DAS Client Libraries An easy way to create your own DAS client Leyla García UniProtTeam."— Presentation transcript:

1 EBI is an Outstation of the European Molecular Biology Laboratory. DAS Client Libraries An easy way to create your own DAS client Leyla García UniProtTeam DAS Workshop 2-4 March 2011

2 How to consume DAS data? 02.06.20162

3 How to build a DAS client?

4 02.06.20164 DAS Client Library

5 DAS Client Libraries Bio::Das:: Lite Das.jsDasobertJDasJsDAS Web sitehttp://sourceforg e.net/projects/bio -das-lite http://github.co m/dasmoth/dalli ance http://www.spic e- 3d.org/dasobert http://code.googl e.com/p/jdas http://code.goog le.com/p/jsdas LanguagePerlJavaScriptJava JavaScript ClientsEnsemblDallianceSpice, DAS Registry, Jalview UniProt DAS Validator Dasty3, GenExp (partially) AdvantagesSpeed, parallelisation, DAS 1.6E registry support Lightweight, no external dependencies, asynchronous support Modular, extensible Modular, extensible, parallelisation (soon) Easy to use, modular, extensible DisadvantagesRequires libcurlDesigned to support Dalliance Documentation, support for asynchronous requests Relies on XSD schemas Lack of documentation Version2.100.5.7 (Dalliance) 1.00.1.6 DAS spec1.6.1.5, 1.61.5.3, some 1.61.61.5.3, 1.6

6 Hands-on 02.06.20166 Slide 2 DAS architecture: http://www.ebi.ac.uk/~rafael/talks/2011-01-17_workshop_predocs/DAS_introduction_rJimenez.pdf Slide 3 Matrix: http://agentjohnson.co.uk/agent_johnson.html Pieces of lego: http://www.active-robots.com/products/early-learning/lego-bricks.shtml Lego Trunk: http://www.lego.com Lego DNA: http://dickinsonn.ism-online.org/category/grade-11-hl-biology/ Slide 4 Lego manual: http://graphics.stanford.edu/~maneesh/augcog/webpage/augcog.html Lego sets: http://www.laconicreply.com/blog/tag/photography?currentPage=2 Lego Ferrari: http://www.ohmyweird.com/2007/05/31/amazing-lego-ferraris/ Lego yellow car: http://www.seankenney.com/portfolio/mazda2/ Lego green car: http://www.entertainmentearth.com/prodinfo.asp?number=LG6743 Slide 6 Lego towers: http://oshimas.com/curious/ http://code.google.com/p/jsdas/wiki/tutorial http://code.google.com/p/jdas/wiki/jdasTutorial http://www.ebi.ac.uk/~aj/das_workshop_2010/ daslite_tutorial.htmlhttp://www.ebi.ac.uk/~aj/das_workshop_2010/ daslite_tutorial.html


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