1. Health Ontology Mapper NCBO BioPortal Integration 2010 i2b2.org Academic User’s Group Oct 13 2010 Rob Wynden (UCSF)

2. Interrelated Teams Health Ontology Mapper: UCSF, UCD, URochester, U Penn, UW caGrid and TRIAD: OSU I2b2 and SHRINE: Harvard HSDB: UCSF, WUSTL, Stanford, UCD, Columbia, Duke, Emory, Johns H, Mayo, OSU, Rockefeller, UW, UTSW, UTHSC (a caGRID based Network) CICTR: UW, UCSF, UCD (SHRINE grid evaluation)

3. Project Objectives General purpose instance mapper that can provide a best-fit translation of locally encoded data into multiple standard formats To allow the just-in-time translation of locally encoded data (not handled during ETL) To allow researchers to request data in any standard format that they require Enable inter-institutional sharing in standard formats using i2b2 with SHRINE and caGRID (for example RxNorm over the CICTR grid)

4. New Project Objectives To allow HOM to reference both source and target terminologies as published on BioPortal. To allow HOM to consume HL7 CTSII instance maps directly from the NCBO BioPortal. To create a new terminology infrastructure that is completely free of UML. (No clean translation from OWL to UML exists). To allow terminologists to create &curate terminologies on BioPortal.

6. Thanks! Questions? Rob Wynden Manager of Research & Development Academic Research Systems UCSF